diff --git a/tools/graphlan/export2graphlan/Snakefile b/tools/graphlan/export2graphlan/Snakefile index 3377b9c8733be9a50134a5ae2d1740d3dbf5f8c3..448fcf072da3d3c1defeca1d1af2873e4298017e 100644 --- a/tools/graphlan/export2graphlan/Snakefile +++ b/tools/graphlan/export2graphlan/Snakefile @@ -6,9 +6,9 @@ rule export2graphlan: __export2graphlan_input output: tree = __export2graphlan_output_tree, - annot = __export2graphlan_output_annot + annot = __export2graphlan_output_annotation params: exec_command = __export2graphlan_exec_command, options = __export2graphlan_options shell: - "{params.exec_command} {params.options} -i {input} -tree {output.tree} --annotation {output.annot}" + "{params.exec_command} {params.options} -i {input} --tree {output.tree} --annotation {output.annot}" diff --git a/tools/graphlan/graphlan_annotate/Snakefile b/tools/graphlan/graphlan_annotate/Snakefile index c7aa660cea430766b5a6f5e9c25cf6788a4db6a4..6a1b11736878fdfe639a2b686a8515f601357a5b 100644 --- a/tools/graphlan/graphlan_annotate/Snakefile +++ b/tools/graphlan/graphlan_annotate/Snakefile @@ -3,8 +3,8 @@ __graphlan_annotate_options = config['graphlan_annotate'].get('options', "") rule graphlan_annotate: input: - tree = __graphlan_annotate_input_tree - annot = __graphlan_annotate_input_annot + tree = __graphlan_annotate_input_tree, + annot = __graphlan_annotate_input_annotation output: __graphlan_annotate_output params: