diff --git a/tools/eggnogmapper2/annotate/example_usage/config.yaml b/tools/eggnogmapper2/annotate/example_usage/config.yaml
index c7db75de9db3189ffa55b7a30aeb8813d1c34708..8e808da3b2b881ad7bb0afd4c8f178958c33c116 100644
--- a/tools/eggnogmapper2/annotate/example_usage/config.yaml
+++ b/tools/eggnogmapper2/annotate/example_usage/config.yaml
@@ -1,5 +1,5 @@
 snakefiles:
-    eggnogmapper2_annotate: /pasteur/projets/policy01/Atm/snakemake/tools/eggnogmapper2/annotate/Snakefile
+    eggnogmapper2_annotate: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/eggnogmapper2/annotate/Snakefile
 
 input_dir: /pasteur/projets/policy01/Atm/kenzo/sandbox/20200210_test_snakemake/test_output/eggnogmapper2/diamond/
 output_dir: /pasteur/projets/policy01/Atm/kenzo/sandbox/20200210_test_snakemake/test_output
diff --git a/tools/eggnogmapper2/diamond/example_usage/config.yaml b/tools/eggnogmapper2/diamond/example_usage/config.yaml
index 5fe001f10aaab0b262680238247ff6684e7a9f5f..1db91027434c1c5e55d0f5d25f6ab5f9131b07b3 100644
--- a/tools/eggnogmapper2/diamond/example_usage/config.yaml
+++ b/tools/eggnogmapper2/diamond/example_usage/config.yaml
@@ -1,5 +1,5 @@
 snakefiles:
-    eggnogmapper2_diamond: /pasteur/projets/policy01/Atm/snakemake/tools/eggnogmapper2/diamond/Snakefile
+    eggnogmapper2_diamond: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/eggnogmapper2/diamond/Snakefile
 
 input_dir: /pasteur/projets/policy01/Atm/kenzo/sandbox/20200210_test_snakemake/test_output/split_fasta
 output_dir: /pasteur/projets/policy01/Atm/kenzo/sandbox/20200210_test_snakemake/test_output
diff --git a/tools/utils/cat/example_usage/config.yaml b/tools/utils/cat/example_usage/config.yaml
index b0d0444ad73e58f3c1e6ebdde07204907fb38d95..fc1b43bf52c773c5974c1461092232cc4382b753 100644
--- a/tools/utils/cat/example_usage/config.yaml
+++ b/tools/utils/cat/example_usage/config.yaml
@@ -1,5 +1,5 @@
 snakefiles:
-    cat: /pasteur/projets/policy01/Atm/snakemake/tools/utils/cat/Snakefile
+    cat: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/utils/cat/Snakefile
 
 input_dir: /pasteur/projets/policy01/Atm/kenzo/sandbox/20200210_test_snakemake/test_output/eggnogmapper2/diamond/
 output_dir: /pasteur/projets/policy01/Atm/kenzo/sandbox/20200210_test_snakemake/test_output
diff --git a/tools/utils/split_fasta/example_usage/config.yaml b/tools/utils/split_fasta/example_usage/config.yaml
index 559a78914eed47dc84b3382b4e651ad793500dcb..6b47f0307f8fd3e60d0f03be8a11023c5d198d6e 100644
--- a/tools/utils/split_fasta/example_usage/config.yaml
+++ b/tools/utils/split_fasta/example_usage/config.yaml
@@ -1,5 +1,5 @@
 snakefiles:
-    split_fasta: /pasteur/projets/policy01/Atm/snakemake/tools/utils/split_fasta/Snakefile
+    split_fasta: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/utils/split_fasta/Snakefile
 
 input_fasta: /pasteur/projets/policy01/DBs/IGC/2014-9.9M/IGC.fa
 output_dir: /pasteur/projets/policy01/sandbox/20200210_test_snakemake/output
diff --git a/workflows/eggnogmapperv2/config.yaml b/workflows/eggnogmapperv2/config.yaml
index 10bd4b1ef1e47f342d64ab38b703e4c292be6d56..4e3f44d53646c5bd929560746f479956a1684b73 100644
--- a/workflows/eggnogmapperv2/config.yaml
+++ b/workflows/eggnogmapperv2/config.yaml
@@ -1,8 +1,8 @@
 snakefiles:
-    eggnogmapper2_diamond: /pasteur/projets/policy01/Atm/snakemake/tools/eggnogmapper2/diamond/Snakefile
-    split_fasta: /pasteur/projets/policy01/Atm/snakemake/tools/utils/split_fasta/Snakefile
-    cat: /pasteur/projets/policy01/Atm/snakemake/tools/utils/cat/Snakefile
-    eggnogmapper2_annotate: /pasteur/projets/policy01/Atm/snakemake/tools/eggnogmapper2/annotate/Snakefile
+    eggnogmapper2_diamond: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/eggnogmapper2/diamond/Snakefile
+    split_fasta: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/utils/split_fasta/Snakefile
+    cat: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/utils/cat/Snakefile
+    eggnogmapper2_annotate: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/eggnogmapper2/annotate/Snakefile
 
 input_fasta: /pasteur/homes/kehillio/Atm/kenzo/sandbox/20200210_test_snakemake/test.fa
 output_dir: /pasteur/homes/kehillio/Atm/kenzo/sandbox/20200210_test_snakemake/test_output
diff --git a/workflows/metaphlan2/paired_metaphlan2/config.yaml b/workflows/metaphlan2/paired_metaphlan2/config.yaml
index 21b4cbde2f02258dc4727f8c7fb95bf64978f675..077607ac5800b5d0d208ed5a185ae1c577b5a09f 100644
--- a/workflows/metaphlan2/paired_metaphlan2/config.yaml
+++ b/workflows/metaphlan2/paired_metaphlan2/config.yaml
@@ -1,8 +1,8 @@
 snakefiles:
-  metaphlan2: /pasteur/projets/policy01/Atm/snakemake/tools/metaphlan2/metaphlan2/paired/Snakefile
-  metaphlan2_merge: /pasteur/projets/policy01/Atm/snakemake/tools/metaphlan2/metaphlan2_merge/Snakefile
-  metaphlan2_heatmap: /pasteur/projets/policy01/Atm/snakemake/tools/metaphlan2/metaphlan2_heatmap/Snakefile
-  graphlan_from_metaphlan2: /pasteur/projets/policy01/Atm/snakemake/subworkflows/graphlan_from_metaphlan2/Snakefile
+  metaphlan2: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/metaphlan2/metaphlan2/paired/Snakefile
+  metaphlan2_merge: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/metaphlan2/metaphlan2_merge/Snakefile
+  metaphlan2_heatmap: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/metaphlan2/metaphlan2_heatmap/Snakefile
+  graphlan_from_metaphlan2: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/subworkflows/graphlan_from_metaphlan2/Snakefile
 
 samples:
   - sample_1
diff --git a/workflows/metaphlan2/single_metaphlan2/config.yaml b/workflows/metaphlan2/single_metaphlan2/config.yaml
index 6d7b5bf0d573cee970a0122ca45ad7b0ea941363..3d5dccc54ba33a3ec9e846d4dcd2812b383ea610 100644
--- a/workflows/metaphlan2/single_metaphlan2/config.yaml
+++ b/workflows/metaphlan2/single_metaphlan2/config.yaml
@@ -1,8 +1,8 @@
 snakefiles:
-  metaphlan2: /pasteur/projets/policy01/Atm/snakemake/tools/metaphlan2/metaphlan2/single/Snakefile
-  metaphlan2_merge: /pasteur/projets/policy01/Atm/snakemake/tools/metaphlan2/metaphlan2_merge/Snakefile
-  metaphlan2_heatmap: /pasteur/projets/policy01/Atm/snakemake/tools/metaphlan2/metaphlan2_heatmap/Snakefile
-  graphlan_from_metaphlan2: /pasteur/projets/policy01/Atm/snakemake/subworkflows/graphlan_from_metaphlan2/Snakefile
+  metaphlan2: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/metaphlan2/metaphlan2/single/Snakefile
+  metaphlan2_merge: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/metaphlan2/metaphlan2_merge/Snakefile
+  metaphlan2_heatmap: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/tools/metaphlan2/metaphlan2_heatmap/Snakefile
+  graphlan_from_metaphlan2: /pasteur/zeus/projets/p02/metasig/gitlab/snakemake/subworkflows/graphlan_from_metaphlan2/Snakefile
 
 samples:
   - sample_1
diff --git a/workflows/metaphlan3/paired_metaphlan2/Snakefile b/workflows/metaphlan3/paired_metaphlan2/Snakefile
index 914d5c85460285996acbdae8baf53da266746cd5..eecd4a4be184e070d0ac47a1ccced07e3eb9dafb 100644
--- a/workflows/metaphlan3/paired_metaphlan2/Snakefile
+++ b/workflows/metaphlan3/paired_metaphlan2/Snakefile
@@ -13,11 +13,11 @@ __main_output_dir = config.get('output_dir', 'output')
 __metaphlan3_output_dir = __main_output_dir + "/metaphlan3"
 __metaphlan3_input_type = config['metaphlan3'].get('input_type', 'fastq')
 __metaphlan3_input_r1 = "{dir}/{sample}{ext}".format(dir=__input_dir,
-                                                      sample="{sample}",
-                                                      ext="_1.fq.gz")
+                                                     sample="{sample}",
+                                                     ext="_1.fq.gz")
 __metaphlan3_input_r2 = "{dir}/{sample}{ext}".format(dir=__input_dir,
-                                                      sample="{sample}",
-                                                      ext="_2.fq.gz")
+                                                     sample="{sample}",
+                                                     ext="_2.fq.gz")
 __metaphlan3_output_profile = "{dir}/{sample}.profile.tsv".format(dir=__metaphlan3_output_dir,
                                                                   sample="{sample}")
 __metaphlan3_output_bowtie2out = "{output_dir}/{sample}.bowtie2.bz2".format(output_dir=__metaphlan3_output_dir, sample="{sample}")