Commit d1e501f6 authored by Kenzo-Hugo Hillion's avatar Kenzo-Hugo Hillion
Browse files

fix Snakefile

parent 491d5f1c
......@@ -14,8 +14,8 @@ rule metaphlan3:
exec_command = __metaphlan3_exec_command,
modules = __metaphlan3_modules,
input_type = __metaphlan3_input_type,
bowtie2out = "{output_dir}/bowtie2/{sample}.bowtie2.bz2".format(output_dir=__metaphlan3_output_dir, sample="{sample}"),
sams = "{output_dir}/sams/{sample}.sam.bz2".format(output_dir=__metaphlan3_output_dir, sample="{sample}"),
bowtie2out = "{output_dir}/{sample}.bowtie2.bz2".format(output_dir=__metaphlan3_output_dir, sample="{sample}"),
sams = "{output_dir}/{sample}.bz2".format(output_dir=__metaphlan3_output_dir, sample="{sample}"),
options = __metaphlan3_options
threads:
__metaphlan3_threads
......
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