Commits · 8c7edff76fc7763873a45dc578add7baa0fcc4dd · Metagenomics / snakemake

11 Feb, 2020 1 commit
- finish Snakefile for splitting Fasta · 8c7edff7
  Kenzo-Hugo Hillion authored Feb 11, 2020
  
  8c7edff7
10 Feb, 2020 1 commit
- start Snakefile to split fasta · 2c621522
  Kenzo-Hugo Hillion authored Feb 10, 2020
  
  2c621522
26 Jul, 2019 3 commits
- fix typo dendrogram · e3b2c07b
  Kenzo-Hugo Hillion authored Jul 26, 2019
  
  e3b2c07b
- Merge branch '14-metaphlan2-paired' into 'master' · f485ebed
  Kenzo-Hugo Hillion authored Jul 26, 2019
```
Metaphlan2 to use paired-end reads

Closes #14

See merge request !1
```
  f485ebed
- Metaphlan2 to use paired-end reads · b44971f1
  Kenzo-Hugo Hillion authored Jul 26, 2019
  
  b44971f1
23 Jul, 2019 1 commit
- fix metaphlan2 workflow · 727b51e0
  Kenzo-Hugo Hillion authored Jul 23, 2019
  
  727b51e0
16 May, 2019 3 commits
- add module dependency for graphlan · ba3a4101
  Kenzo-Hugo Hillion authored May 16, 2019
  
  ba3a4101
- fix way to build command line · f2052487
  Kenzo-Hugo Hillion authored May 16, 2019
  
  f2052487
- add possibility to add modules dependencies · bc228c62
  Kenzo-Hugo Hillion authored May 16, 2019
  
  bc228c62
14 May, 2019 3 commits
- update title · 233ca151
  Kenzo-Hugo Hillion authored May 14, 2019
  
  233ca151
- update relative repo path · 164333d6
  Kenzo-Hugo Hillion authored May 14, 2019
  
  164333d6
- update documentation and best practices · 3a4ec78c
  Kenzo-Hugo Hillion authored May 14, 2019
  
  3a4ec78c
13 May, 2019 11 commits
- fix typo in Snakefiles · 7af20a4c
  Kenzo-Hugo Hillion authored May 13, 2019
  
  7af20a4c
- typo snakemake · 7f3a14c9
  Kenzo-Hugo Hillion authored May 13, 2019
  
  7f3a14c9
- fix relative path · 1d152b70
  Kenzo-Hugo Hillion authored May 13, 2019
  
  1d152b70
- fix relative paths to tools Snakefile · 25277f2d
  Kenzo-Hugo Hillion authored May 13, 2019
  
  25277f2d
- fix Snakefile names · 52c704d8
  Kenzo-Hugo Hillion authored May 13, 2019
  
  52c704d8
- rename all as SnakeFile · 9b5fbe32
  Kenzo-Hugo Hillion authored May 13, 2019
  
  9b5fbe32
- add possibility to change ref path to rules in config files · 34ac04e2
  Kenzo-Hugo Hillion authored May 13, 2019
  
  34ac04e2
- add graphlan to metaphlan2 workflow · 8bb596da
  Kenzo-Hugo Hillion authored May 13, 2019
  
  8bb596da
- add subworkflow part and subworkflow metaphlan to graphlan · 8c192e82
  Kenzo-Hugo Hillion authored May 13, 2019
  
  8c192e82
- add rules for graphlan · 2462bf79
  Kenzo-Hugo Hillion authored May 13, 2019
  
  2462bf79
- update README for tools · 43f4ae31
  Kenzo-Hugo Hillion authored May 13, 2019
  
  43f4ae31
10 May, 2019 2 commits
- continue README for tool descriptions · 7d24d76f
  Kenzo-Hugo Hillion authored May 10, 2019
  
  7d24d76f
- start Documentation for Snakemake tools · a7e1c446
  Kenzo-Hugo Hillion authored May 10, 2019
  
  a7e1c446
09 May, 2019 4 commits
- add information about the way of writing workflow · 73abde0f
  Kenzo-Hugo Hillion authored May 09, 2019
  
  73abde0f
- add example of workflow for metaphlan2 · 11a919a4
  Kenzo-Hugo Hillion authored May 09, 2019
  
  11a919a4
- add rules for metaphlan2 heatmap · 9b792513
  Kenzo-Hugo Hillion authored May 09, 2019
  
  9b792513
- add SnakeFile for metaphlan2 merge · 44756d39
  Kenzo-Hugo Hillion authored May 09, 2019
  
  44756d39
07 May, 2019 3 commits
- update README · a35b74dd
  Kenzo-Hugo Hillion authored May 07, 2019
  
  a35b74dd
- add rule and example for metaphlan2 · 7f8a53c3
  Kenzo-Hugo Hillion authored May 07, 2019
  
  7f8a53c3
- Initial commit · d6cfbd40
  Kenzo-Hugo Hillion authored May 07, 2019
  
  d6cfbd40