snakemake issueshttps://gitlab.pasteur.fr/metagenomics/snakemake/-/issues2019-07-26T14:55:46+02:00https://gitlab.pasteur.fr/metagenomics/snakemake/-/issues/14Metaphlan2 to use paired-end reads2019-07-26T14:55:46+02:00Kenzo-Hugo HillionMetaphlan2 to use paired-end readshttps://gitlab.pasteur.fr/metagenomics/snakemake/-/issues/12Make module usable for avaible Snakefiles2019-05-16T17:40:27+02:00Kenzo-Hugo HillionMake module usable for avaible Snakefileshttps://gitlab.pasteur.fr/metagenomics/snakemake/-/issues/11Snakefile for MEGAHIT2019-06-27T16:50:43+02:00Kenzo-Hugo HillionSnakefile for MEGAHIThttps://gitlab.pasteur.fr/metagenomics/snakemake/-/issues/10Snakefile for MetaVelvet2019-06-27T16:50:41+02:00Kenzo-Hugo HillionSnakefile for MetaVelvethttps://gitlab.pasteur.fr/metagenomics/snakemake/-/issues/8add rules for metaphlan2 cladogram2019-05-13T18:15:14+02:00Kenzo-Hugo Hillionadd rules for metaphlan2 cladogramhttps://gitlab.pasteur.fr/metagenomics/snakemake/-/issues/5Documentation about the way to include tools in workflow2019-05-09T15:51:34+02:00Kenzo-Hugo HillionDocumentation about the way to include tools in workflowhttps://gitlab.pasteur.fr/metagenomics/snakemake/-/issues/4add workflow metaphlan22019-05-09T14:59:09+02:00Kenzo-Hugo Hillionadd workflow metaphlan2Just copy the example developed within the workflow benchmarking repository and add documentation and examples.Just copy the example developed within the workflow benchmarking repository and add documentation and examples.https://gitlab.pasteur.fr/metagenomics/snakemake/-/issues/3Metaphlan2 heatmap rule2019-05-09T13:32:33+02:00Kenzo-Hugo HillionMetaphlan2 heatmap rule* [x] Snakemake rule to be imported in workflow
* [x] Example of usage within a workflow
* [x] Template Config file for the rule* [x] Snakemake rule to be imported in workflow
* [x] Example of usage within a workflow
* [x] Template Config file for the rulehttps://gitlab.pasteur.fr/metagenomics/snakemake/-/issues/2Metaphlan2 merge rule2019-05-09T13:32:48+02:00Kenzo-Hugo HillionMetaphlan2 merge rule* [x] Snakemake rule to be imported in workflow
* [x] Example of usage within a workflow
* [x] Template Config file for the rule* [x] Snakemake rule to be imported in workflow
* [x] Example of usage within a workflow
* [x] Template Config file for the rulehttps://gitlab.pasteur.fr/metagenomics/snakemake/-/issues/1Metaphlan2 rule2019-05-07T17:20:42+02:00Kenzo-Hugo HillionMetaphlan2 rule* [x] Snakemake rule to be imported in workflow
* [x] Example of usage within a workflow
* [x] Template Config file for the rule* [x] Snakemake rule to be imported in workflow
* [x] Example of usage within a workflow
* [x] Template Config file for the ruleKenzo-Hugo HillionKenzo-Hugo Hillion