Commit 2054450f authored by mariefbourdon's avatar mariefbourdon
Browse files

modif mark_prop chi

parent 716a1393
{"classes":["tbl_df","tbl","data.frame"],"ncol":11,"nrow":6}
\ No newline at end of file
"0","tab2 <- mark_prop(tab2,cross=""F2"",homo=0.1,hetero=0.1)"
"0","head(tab2)"
{"classes":["tbl_df","tbl","data.frame"],"ncol":10,"nrow":6}
\ No newline at end of file
"0","rqtl_file <- write_rqtl(geno=genos,pheno=phenos,tab=tab2,ref=strains,par1=""parent1"",par2=""parent2"",prefix=""ind_"",pos=""cM_cox"")"
"0",""
"0","rqtl_file[1:10,1:7]"
{"classes":["tbl_df","tbl","data.frame"],"ncol":7,"nrow":10}
\ No newline at end of file
"0","tab <- mark_tab(genos)
"
"2","Error in mark_tab(genos) : impossible de trouver la fonction ""mark_tab""
"
{"frames":[],"message":"Error in mark_tab(genos) : impossible de trouver la fonction \"mark_tab\"\n"}
\ No newline at end of file
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\ No newline at end of file
......@@ -5,76 +5,93 @@
"1"," Sample.ID "
"1"," Allele1...Forward "
"1"," Allele2...Forward "
"1"," X "
"1"," Y "
"1"," GC.Score "
"1"," Theta "
"1","
"
"1"," Length:2002493 "
"1"," Length:2002493 "
"1"," Length:2002493 "
"1"," Length:2002493 "
"1"," Min. : 0.0000 "
"1"," Min. : 0.0000 "
"1"," Min. :0.0000 "
"1"," Min. :0.0000 "
"1","
"
"1"," Class :character "
"1"," Class :character "
"1"," Class :character "
"1"," Class :character "
"1"," 1st Qu.: 0.0260 "
"1"," 1st Qu.: 0.0480 "
"1"," 1st Qu.:0.6747 "
"1"," 1st Qu.:0.0420 "
"1","
"
"1"," Mode :character "
"1"," Mode :character "
"1"," Mode :character "
"1"," Mode :character "
"1"," Median : 0.1750 "
"1"," Median : 0.5010 "
"1"," Median :0.8550 "
"1"," Median :0.6620 "
"1","
"
"1"," "
"1"," "
"1"," "
"1"," "
"1"," Mean : 0.5716 "
"1"," Mean : 0.6564 "
"1"," Mean :0.7276 "
"1"," Mean :0.5606 "
"1","
"
"1"," "
"1"," "
"1"," "
"1"," "
"1"," 3rd Qu.: 0.8560 "
"1"," 3rd Qu.: 1.0470 "
"1"," 3rd Qu.:0.9245 "
"1"," 3rd Qu.:0.9800 "
"1","
"
"1"," "
"1"," "
"1"," "
"1"," "
"1"," Max. :25.1610 "
"1"," Max. :20.7940 "
"1"," Max. :0.9889 "
"1"," Max. :1.0000 "
"1","
"
"1"," "
"1"," "
"1"," "
"1"," "
"1","
"
"1",""
"1"," X "
"1"," Y "
"1"," GC.Score "
"1"," Theta "
"1","
"
"1"," Min. : 0.0000 "
"1"," Min. : 0.0000 "
"1"," Min. :0.0000 "
"1"," Min. :0.0000 "
"1","
"
"1"," 1st Qu.: 0.0260 "
"1"," 1st Qu.: 0.0480 "
"1"," 1st Qu.:0.6747 "
"1"," 1st Qu.:0.0420 "
"1","
"
"1"," Median : 0.1750 "
"1"," Median : 0.5010 "
"1"," Median :0.8550 "
"1"," Median :0.6620 "
"1","
"
"1"," Mean : 0.5716 "
"1"," Mean : 0.6564 "
"1"," Mean :0.7276 "
"1"," Mean :0.5606 "
"1","
"
"1"," 3rd Qu.: 0.8560 "
"1"," 3rd Qu.: 1.0470 "
"1"," 3rd Qu.:0.9245 "
"1"," 3rd Qu.:0.9800 "
"1","
"
"1"," Max. :25.1610 "
"1"," Max. :20.7940 "
"1"," Max. :0.9889 "
"1"," Max. :1.0000 "
"1","
"
"1"," NA's :87 "
"1"," NA's :87 "
"1"," NA's :326 "
......
"0","data(stuart_tab)"
"0","summary(stuart_tab)"
"1",""
"1"," marker "
"1"," allele_1 "
"1"," allele_2 "
"1"," n_HM1 "
"1","
"
"1"," Length:11125 "
"1"," Length:11125 "
"1"," Length:11125 "
"1"," Min. : 0.0 "
"1","
"
"1"," Class :character "
"1"," Class :character "
"1"," Class :character "
"1"," 1st Qu.: 44.0 "
"1","
"
"1"," Mode :character "
"1"," Mode :character "
"1"," Mode :character "
"1"," Median :174.0 "
"1","
"
"1"," "
"1"," "
"1"," "
"1"," Mean :123.9 "
"1","
"
"1"," "
"1"," "
"1"," "
"1"," 3rd Qu.:176.0 "
"1","
"
"1"," "
"1"," "
"1"," "
"1"," Max. :176.0 "
"1","
"
"1",""
"1"," n_HM2 "
"1"," n_HT "
"1"," n_NA "
"1","
"
"1"," Min. : 0.00 "
"1"," Min. : 0.00 "
"1"," Min. : 0.00 "
"1","
"
"1"," 1st Qu.: 0.00 "
"1"," 1st Qu.: 0.00 "
"1"," 1st Qu.: 0.00 "
"1","
"
"1"," Median : 0.00 "
"1"," Median : 0.00 "
"1"," Median : 1.00 "
"1","
"
"1"," Mean : 19.92 "
"1"," Mean : 19.24 "
"1"," Mean : 12.91 "
"1","
"
"1"," 3rd Qu.: 34.00 "
"1"," 3rd Qu.: 5.00 "
"1"," 3rd Qu.: 5.00 "
"1","
"
"1"," Max. :175.00 "
"1"," Max. :176.00 "
"1"," Max. :176.00 "
"1","
"
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