Commit 546d2317 authored by Marie Bourdon's avatar Marie Bourdon
Browse files

mark_allele option parNH

parent 2389d668
......@@ -7,9 +7,9 @@
\format{
A data frame with 11125 rows and 7 variables
\describe{
\item{SNP.Name}{name of the marker}
\item{Allele_1}{first allele of the marker}
\item{Allele_2}{second allele of the marker}
\item{marker}{name of the marker}
\item{allele_1}{first allele of the marker}
\item{allele_2}{second allele of the marker}
\item{n_HM1}{number of homozygous individuals for the first allele}
\item{n_HM2}{number of homozygous individuals for the second allele}
\item{n_HT}{number of heterozygous individuals}
......
......@@ -4,7 +4,18 @@
\alias{write_rqtl}
\title{Create data frame in Rqtl CSV format}
\usage{
write_rqtl(geno, pheno, tab, ref, par1, par2, prefix, pos, path = NA)
write_rqtl(
geno,
pheno,
tab,
ref,
par1,
par2,
par_N = TRUE,
prefix,
pos,
path = NA
)
}
\arguments{
\item{geno}{data frame with the genotyping results for your cross}
......
......@@ -95,8 +95,6 @@ Then we will use the different mark_* functions in order to filter the markers.
```{r mark_match}
tab2 <- mark_match(stuart_tab,ref=strains)
tab2 %>% filter(exclude_match==1)
```
......
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