Commit 716a1393 authored by mariefbourdon's avatar mariefbourdon
Browse files

add modif to do

parent baf459b0
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......
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......
...@@ -14,6 +14,7 @@ ...@@ -14,6 +14,7 @@
#### mark_prop #### #### mark_prop ####
## excludes markers depending on proportions of homo/hetorozygous ## excludes markers depending on proportions of homo/hetorozygous
## to modify with chisq.test
mark_prop <- function(tab,cross,homo=NA,hetero=NA,na=0.5){ mark_prop <- function(tab,cross,homo=NA,hetero=NA,na=0.5){
#calculate total number of individuals genotyped for each marker #calculate total number of individuals genotyped for each marker
tab <- tab %>% mutate(n_geno = tab %>% select(n_HM1,n_HM2,n_HT) %>% rowSums(na.rm=TRUE)) tab <- tab %>% mutate(n_geno = tab %>% select(n_HM1,n_HM2,n_HT) %>% rowSums(na.rm=TRUE))
......
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......
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......
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......
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......
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......
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......
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