diff --git a/.Rproj.user/9DAE6990/pcs/files-pane.pper b/.Rproj.user/9DAE6990/pcs/files-pane.pper index aa3d96db46890d28bf29c222a803e29f24a8bdd7..c191ada4d25fa0fda4ce490c5f322d65499417ad 100644 --- a/.Rproj.user/9DAE6990/pcs/files-pane.pper +++ b/.Rproj.user/9DAE6990/pcs/files-pane.pper @@ -1,5 +1,5 @@ { - "path" : "~/Documents/PhD/stuart_package/stuart/vignettes", + "path" : "~/Documents/PhD/stuart_package/stuart", "sortOrder" : [ { "ascending" : true, diff --git a/.Rproj.user/9DAE6990/pcs/source-pane.pper b/.Rproj.user/9DAE6990/pcs/source-pane.pper index 70829f67631c05a34ae267bf4377c69a6b3ef1c1..3249574fb10b23a53547595769fe33dcbefc247e 100644 --- a/.Rproj.user/9DAE6990/pcs/source-pane.pper +++ b/.Rproj.user/9DAE6990/pcs/source-pane.pper @@ -1,3 +1,3 @@ { - "activeTab" : 1 + "activeTab" : 2 } \ No newline at end of file diff --git a/.Rproj.user/9DAE6990/pcs/windowlayoutstate.pper b/.Rproj.user/9DAE6990/pcs/windowlayoutstate.pper index c0a45770f2e927d61932d2d7ec44eb5df148f3f6..eb9b92287346101b373a35d2c4fb7dea0c7a5f29 100644 --- a/.Rproj.user/9DAE6990/pcs/windowlayoutstate.pper +++ b/.Rproj.user/9DAE6990/pcs/windowlayoutstate.pper @@ -7,7 +7,7 @@ }, "right" : { "panelheight" : 1402, - "splitterpos" : 878, + "splitterpos" : 877, "topwindowstate" : "NORMAL", "windowheight" : 1440 } diff --git a/.Rproj.user/9DAE6990/pcs/workbench-pane.pper b/.Rproj.user/9DAE6990/pcs/workbench-pane.pper index b9fcffa7969da03fcda0fc797bd2d2041388fd6e..a729e387a19b91f4e513ea26cf9b52c3ac4a943d 100644 --- a/.Rproj.user/9DAE6990/pcs/workbench-pane.pper +++ b/.Rproj.user/9DAE6990/pcs/workbench-pane.pper @@ -1,6 +1,6 @@ { "TabSet1" : 1, - "TabSet2" : 3, + "TabSet2" : 0, "TabZoom" : { } } \ No newline at end of file diff --git a/.Rproj.user/9DAE6990/sources/prop/INDEX b/.Rproj.user/9DAE6990/sources/prop/INDEX index 736b651a028fd32e72bac0befaac79d7666e7a7b..5a0bba64a382300e899980ac3373b28c390f8566 100644 --- a/.Rproj.user/9DAE6990/sources/prop/INDEX +++ b/.Rproj.user/9DAE6990/sources/prop/INDEX @@ -21,6 +21,7 @@ ~%2FDocuments%2FPhD%2Fstuart_package%2Fstuart%2FR%2Fstuart_tab-data.R="5D74CC67" ~%2FDocuments%2FPhD%2Fstuart_package%2Fstuart%2FR%2Ftab_mark.R="38BAAAF9" ~%2FDocuments%2FPhD%2Fstuart_package%2Fstuart%2FR%2Fwrite_rqtl.R="9A1DD653" +~%2FDocuments%2FPhD%2Fstuart_package%2Fstuart%2FREADME.Rmd="32CDEA17" ~%2FDocuments%2FPhD%2Fstuart_package%2Fstuart%2Fman%2Fmark_na.Rd="E059577D" ~%2FDocuments%2FPhD%2Fstuart_package%2Fstuart%2Fman%2Fmark_prop.Rd="A5177778" ~%2FDocuments%2FPhD%2Fstuart_package%2Fstuart%2Fvignettes%2FstuaRt.Rmd="5BDF5DBA" diff --git a/.Rproj.user/shared/notebooks/paths b/.Rproj.user/shared/notebooks/paths index 9a8495e543e3ce6c3f75c2c7691e3d8a244cee85..2dc5cdd044a76a6ac003350e9e93398e93679308 100644 --- a/.Rproj.user/shared/notebooks/paths +++ b/.Rproj.user/shared/notebooks/paths @@ -6,6 +6,7 @@ /Users/mariebourdon/Documents/PhD/stuart_package/stuart/R/mark_prop.R="30FA9E8C" /Users/mariebourdon/Documents/PhD/stuart_package/stuart/R/tab_mark.R="F0B2417" /Users/mariebourdon/Documents/PhD/stuart_package/stuart/R/write_rqtl.R="F07CE16C" +/Users/mariebourdon/Documents/PhD/stuart_package/stuart/README.Rmd="297B98D" /Users/mariebourdon/Documents/PhD/stuart_package/stuart/man/mark_na.Rd="C8CA0D4F" /Users/mariebourdon/Documents/PhD/stuart_package/stuart/man/mark_prop.Rd="893B273D" /Users/mariebourdon/Documents/PhD/stuart_package/stuart/vignettes/stuaRt.Rmd="DA6206CB" diff --git a/README.Rmd b/README.Rmd index b8320425624a543d4d5c6b7793a07febe4d10a9e..3508293b02bebfe80200531c22e30238b9756cd9 100644 --- a/README.Rmd +++ b/README.Rmd @@ -22,16 +22,10 @@ stuart is a R package used to analyze whole genome genotyping results of animals ## Installation -You can install the released version of stuart from GitLab, by dowloading the latest tar.gz file and installing it with: - -`install.packages(path_to/stuart_X.Y.Z.tar.gz, repos = NULL, type="source")` - - -Or directly in R with: +You can install the released version of stuart from GitLab, directly in R with: `devtools::install_gitlab(repo="mouselab/stuart",host="gitlab.pasteur.fr")` - ## Example To see an example of the use of stuart package with miniMUGA array, consult the package vignette.