From 9983f3933b2a0ab3a50c4f5e36cd8109fb80fa3e Mon Sep 17 00:00:00 2001
From: Thomas Obadia <thomas.obadia@gmail.com>
Date: Wed, 11 Dec 2019 16:53:29 +0100
Subject: [PATCH] Force writing output of all mosquito compartments (6 instead
 of 3) to be in accordance with Output_overview.R

---
 Pv_mod/Simulation.cpp | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/Pv_mod/Simulation.cpp b/Pv_mod/Simulation.cpp
index c0ae280..55479a3 100644
--- a/Pv_mod/Simulation.cpp
+++ b/Pv_mod/Simulation.cpp
@@ -211,9 +211,9 @@ void Simulation::write_output(const char *output_File)
 		for (int v = 0; v < N_mosq; v++)
 		{
 			// Write only compartments S, E and I in mosquitoes
-			for (int k = 3; k < N_M_comp; k++)
+			// for (int k = 3; k < N_M_comp; k++)
 			// Write all compartments in mosquitoes
-			// for (int k = 0; k < N_M_comp; k++)
+			for (int k = 0; k < N_M_comp; k++)
 			{
 				output_Stream << yM_t[i][v][k] << "\t";
 			}
-- 
GitLab