diff --git a/tests/test_digest.py b/tests/test_digest.py index 738ed27d9d4a5eaaaf59c834a0d69021bad369a8..4a9ec042f756c439538c591ad975a2c10b0eba51 100644 --- a/tests/test_digest.py +++ b/tests/test_digest.py @@ -20,7 +20,7 @@ def test_resultonedigestion(): # Test function '__repr__()' res_dig0 = digest.ResultOneDigestion(enz_name, peptides, nb_cleav, pos_mc) - assert res_dig0.__repr__() == "Number of cleavage: 1\nNumber of miss-clea"\ + assert res_dig0.__repr__() == "Number of cleavage: 1\nNumber of misclea"\ "vage: 2\nPositions of miscleavage: [2, 3"\ "]\nRatio of miscleavage: 66.666666666666"\ "66\nPeptides: [Original header: Test\nNo. "\ @@ -113,7 +113,7 @@ def test_resultonedigestion(): # Test function 'get_more_info()' assert res_dig5.get_more_info() == "\nNumber of cleavage: 5\nCleavage pos"\ - "ition: 3, 4, 3\nNumber of miss-cleava"\ + "ition: 3, 4, 3\nNumber of miscleava"\ "ge: 6\nmiscleavage position: 2, 3, "\ "4, 6, 2, 3\nmiscleavage ratio: "\ "54.55%\nSmallest peptide size: 8\nN t"\ @@ -344,7 +344,7 @@ def test_digest_from_input(capsys, tmpdir): # Test input data seq = "WQSDESDFZQSDESDF" res = digest.digest_from_input(seq, enzymes, mode) - assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miss-cle"\ + assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miscle"\ "avage: 0\nPositions of miscleavage: []"\ "\nRatio of miscleavage: 0.0\nPeptides: "\ "[Original header: Input\nNo. peptide: 0"\ @@ -370,7 +370,7 @@ def test_digest_from_input(capsys, tmpdir): fasta_file = tmpdir.join("test.fasta") fasta_file.write(">Fake1\nWQSDESDFZQS\nDESDF\n>Fake2\nNPHARDORCOMPLET") res = digest.digest_from_input(str(fasta_file), enzymes, mode) - assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miss-cle"\ + assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miscle"\ "avage: 0\nPositions of miscleavage: []"\ "\nRatio of miscleavage: 0.0\nPeptides: "\ "[Original header: Fake1\nNo. peptide: 0\n"\ @@ -391,7 +391,7 @@ def test_digest_from_input(capsys, tmpdir): "ide: 4\nEnzyme: fake_enzyme1\nCleav. pos:"\ " 16\nPep. size: 1\nPep. mass: 165.19188\n"\ "Pep. pI: 5.54\nSequence: F\n]\n" - assert res[1][0].__repr__() == "Number of cleavage: 0\nNumber of miss-cle"\ + assert res[1][0].__repr__() == "Number of cleavage: 0\nNumber of miscle"\ "avage: 0\nPositions of miscleavage: []"\ "\nRatio of miscleavage: 0\nPeptides: [O"\ "riginal header: Fake2\nNo. peptide: 0\nEn"\ @@ -404,7 +404,7 @@ def test_digest_from_input(capsys, tmpdir): fastq_file.write("@Fake1\nWQSDESDFZQSDESDF\n+Fake1\nnWQSDESDFZQSDESDF\n@Fa"\ "ke2\nNPHARDORCOMPLET\n+Fake2\nnNPHARDORCOMPLET\n") res = digest.digest_from_input(str(fastq_file), enzymes, mode) - assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miss-cle"\ + assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miscle"\ "avage: 0\nPositions of miscleavage: []"\ "\nRatio of miscleavage: 0.0\nPeptides: "\ "[Original header: Fake1\nNo. peptide: 0\n"\ @@ -425,7 +425,7 @@ def test_digest_from_input(capsys, tmpdir): "ide: 4\nEnzyme: fake_enzyme1\nCleav. pos:"\ " 16\nPep. size: 1\nPep. mass: 165.19188\n"\ "Pep. pI: 5.54\nSequence: F\n]\n" - assert res[1][0].__repr__() == "Number of cleavage: 0\nNumber of miss-cle"\ + assert res[1][0].__repr__() == "Number of cleavage: 0\nNumber of miscle"\ "avage: 0\nPositions of miscleavage: []"\ "\nRatio of miscleavage: 0\nPeptides: [O"\ "riginal header: Fake2\nNo. peptide: 0\nEn"\