From 409382189efa222903ac07de92a72be10640200f Mon Sep 17 00:00:00 2001
From: Nico Maillet <nicolas.maillet@pasteur.fr>
Date: Wed, 3 Feb 2021 16:34:00 +0100
Subject: [PATCH] Fix for python3.5 compatibility
---
rpg/core.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/rpg/core.py b/rpg/core.py
index 389bd43..e670e4c 100644
--- a/rpg/core.py
+++ b/rpg/core.py
@@ -227,7 +227,7 @@ def next_read(file, offset_start, offset_end):
# Open the file, GZIP or not
with (gzip.open(file, "rb") if magic == b"\x1f\x8b"
- else open(file, "rb")) as in_file:
+ else open(str(file), "rb")) as in_file:
first_line = in_file.readline().decode('utf-8')
# FASTQ file
if first_line.startswith("@"):
--
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