diff --git a/tests/test_digest.py b/tests/test_digest.py index 0bcb5603585359984c3b19dd44f54df3a118048a..e52af5dd9684d2564c5e859be20daee5aea59980 100644 --- a/tests/test_digest.py +++ b/tests/test_digest.py @@ -403,7 +403,7 @@ def test_digest_from_input(capsys, tmpdir): fastq_file = tmpdir.join("test.fastq") fastq_file.write("@Fake1\nWQSDESDFZQSDESDF\n+Fake1\nnWQSDESDFZQSDESDF\n@Fa"\ "ke2\nNPHARDORCOMPLET\n+Fake2\nnNPHARDORCOMPLET\n") - res = digest.digest_from_input(fastq_file, enzymes, mode) + res = digest.digest_from_input(str(fastq_file), enzymes, mode) assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miss-cle"\ "avage: 0\nPositions of miss-cleavage: []"\ "\nRatio of miss-cleavage: 0.0\nPeptides: "\