From 4a447f961b00093fa33f609be6b7ac53ee181af2 Mon Sep 17 00:00:00 2001
From: Nicolas MAILLET <nicolas.maillet@pasteur.fr>
Date: Fri, 27 Apr 2018 13:56:25 +0200
Subject: [PATCH] change local.path to str for test
---
tests/test_digest.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/tests/test_digest.py b/tests/test_digest.py
index 0bcb560..e52af5d 100644
--- a/tests/test_digest.py
+++ b/tests/test_digest.py
@@ -403,7 +403,7 @@ def test_digest_from_input(capsys, tmpdir):
fastq_file = tmpdir.join("test.fastq")
fastq_file.write("@Fake1\nWQSDESDFZQSDESDF\n+Fake1\nnWQSDESDFZQSDESDF\n@Fa"\
"ke2\nNPHARDORCOMPLET\n+Fake2\nnNPHARDORCOMPLET\n")
- res = digest.digest_from_input(fastq_file, enzymes, mode)
+ res = digest.digest_from_input(str(fastq_file), enzymes, mode)
assert res[0][0].__repr__() == "Number of cleavage: 4\nNumber of miss-cle"\
"avage: 0\nPositions of miss-cleavage: []"\
"\nRatio of miss-cleavage: 0.0\nPeptides: "\
--
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