From 6fd891b33f7bcd947126b6ca25e7a90e5c6b2b21 Mon Sep 17 00:00:00 2001 From: Nicolas MAILLET <nicolas.maillet@pasteur.fr> Date: Fri, 27 Apr 2018 14:00:13 +0200 Subject: [PATCH] change local.path to str for test --- tests/test_core.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/tests/test_core.py b/tests/test_core.py index 6643e08..90f8c90 100644 --- a/tests/test_core.py +++ b/tests/test_core.py @@ -80,7 +80,7 @@ def test_output_results(capsys, tmpdir): fmt = "csv" quiet = False verbose = 0 - core.output_results(output_file, all_seq_digested, fmt, quiet, verbose) + core.output_results(str(output_file), all_seq_digested, fmt, quiet, verbose) out, err = capsys.readouterr() assert out == output_file.read() assert output_file.read() == "Original_header,No_peptide,Enzyme,Cleaving_"\ @@ -97,7 +97,7 @@ def test_output_results(capsys, tmpdir): fmt = "tsv" quiet = False verbose = 0 - core.output_results(output_file, all_seq_digested, fmt, quiet, verbose) + core.output_results(str(output_file), all_seq_digested, fmt, quiet, verbose) out, err = capsys.readouterr() assert out == output_file.read() assert output_file.read() == "Original_header\tNo_peptide\tEnzyme\tCleavi"\ @@ -115,7 +115,7 @@ def test_output_results(capsys, tmpdir): fmt = "fasta" quiet = False verbose = 0 - core.output_results(output_file, all_seq_digested, fmt, quiet, verbose) + core.output_results(str(output_file), all_seq_digested, fmt, quiet, verbose) out, err = capsys.readouterr() assert out == output_file.read() assert output_file.read() == ">Input_0_fake_enzyme1_4_4_534.52598_3.6\nWQ"\ @@ -132,7 +132,7 @@ def test_output_results(capsys, tmpdir): fmt = "csv" quiet = True verbose = 0 - core.output_results(output_file, all_seq_digested, fmt, quiet, verbose) + core.output_results(str(output_file), all_seq_digested, fmt, quiet, verbose) out, err = capsys.readouterr() # Quiet assert out == "" @@ -152,7 +152,7 @@ def test_output_results(capsys, tmpdir): fmt = "csv" quiet = False verbose = 3 - core.output_results(output_file, all_seq_digested, fmt, quiet, verbose) + core.output_results(str(output_file), all_seq_digested, fmt, quiet, verbose) out, err = capsys.readouterr() assert output_file.read() == "Original_header,No_peptide,Enzyme,Cleaving_"\ "pos,Peptide_size,Peptide_mass,pI,Sequence\n"\ -- GitLab