From 95f5e06a8fee8884a40e230f1247c966002fc8aa Mon Sep 17 00:00:00 2001
From: Nico Maillet <nicolas.maillet@pasteur.fr>
Date: Wed, 3 Feb 2021 16:38:42 +0100
Subject: [PATCH] Remove fix for python3.5 compatibility
---
rpg/core.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/rpg/core.py b/rpg/core.py
index e670e4c..d9f5585 100644
--- a/rpg/core.py
+++ b/rpg/core.py
@@ -219,7 +219,7 @@ def next_read(file, offset_start, offset_end):
:type offset_end: int
"""
# Is it a GZIP file?
- test_file = open(str(file), "rb")
+ test_file = open(file, "rb")
# Get the first values
magic = test_file.read(2)
# Close the file
@@ -227,7 +227,7 @@ def next_read(file, offset_start, offset_end):
# Open the file, GZIP or not
with (gzip.open(file, "rb") if magic == b"\x1f\x8b"
- else open(str(file), "rb")) as in_file:
+ else open(file, "rb")) as in_file:
first_line = in_file.readline().decode('utf-8')
# FASTQ file
if first_line.startswith("@"):
--
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