Specify miscleavage site for an enzyme

Hi, I was wondering if there is a simple way to specify a number of miscleavage sites for a certain enzyme and get all the theoretical peptides. In other words, all the possible digested peptides, both when an enzyme does not miscleave and when the enzyme miscleaves according to the specified number of miscleavage sites.

The -m, --miscleavage does not seem to handle this issue since it's a probability based calculation.

Indeed, it is not possible at the moment but this would be a really good feature!

I will definitely add it in a future release, but unfortunately, I don't know when I will have time to do it.

mentioned in commit f283b099

closed