diff --git a/Manifest.toml b/Manifest.toml index 846393d1bad59809863a236de83a9c78ec1155d4..0424e0330a3f3d206b3fb49261580b2adad85688 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -312,7 +312,7 @@ version = "1.9.0" [[deps.PlanarLarvae]] deps = ["DelimitedFiles", "HDF5", "JSON3", "LinearAlgebra", "MAT", "Meshes", "OrderedCollections", "Random", "SHA", "StaticArrays", "Statistics", "StatsBase", "StructTypes"] -git-tree-sha1 = "fe89d5f592c8ba763a13330cde6696f721f828c7" +git-tree-sha1 = "6d1f48b16424c847829a325cc9f49329becf9cf8" repo-rev = "dev" repo-url = "https://gitlab.pasteur.fr/nyx/planarlarvae.jl" uuid = "c2615984-ef14-4d40-b148-916c85b43307" diff --git a/src/LarvaDatasets.jl b/src/LarvaDatasets.jl index fa8a0f1efc5b288759edd8d063978e59d4afbda4..2f6f45c6d3e9aeaf4718d97e8bf3062c187366a9 100644 --- a/src/LarvaDatasets.jl +++ b/src/LarvaDatasets.jl @@ -626,9 +626,8 @@ function new_write_larva_dataset_hdf5(output_dir, input_data; win = window_length # shorter name to keep next line within the allowed text width output_file = "larva_dataset_$(date)_$(win)_$(win)_$(total_sample_size).hdf5" output_file = joinpath(output_dir, output_file) - c = Threads.Condition() h5open(output_file, "w") do h5 - create_group(h5, "samples") + g = create_group(h5, "samples") sample(loader, :spine) do _, file, counts, segments sampleid, nsegments = counts @assert length(segments) == nsegments