From ce24c1837c1c15ae705ca7d66649b86f50ac718a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Fran=C3=A7ois=20Laurent?= <francois.laurent@posteo.net>
Date: Mon, 17 Apr 2023 11:01:53 +0200
Subject: [PATCH] mentions about LarvaTaggerPipelines and scenarii.sh

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 doc/develop.md | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/doc/develop.md b/doc/develop.md
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+LarvaTagger is an umbrella project for the UI LarvaTagger.jl, the default MaggotUBA-based tagging backends and other related Julia and Python projects.
+
 # Project map
 
 <img src="project_structure.svg" />
+
+The TidyObservables.jl and ObservationPolicies.jl are hosted on gitlab.com.
+
+## Deployment projects
+
+More related projects can be found at [gitlab.com/LarvaTaggerPipelines](https://gitlab.com/larvataggerpipelines).
+For example, the [Pesticides](https://gitlab.com/larvataggerpipelines/pesticides), [t5_analysis_replicates](https://gitlab.com/larvataggerpipelines/t5_analysis_replicates) and [TrxmatRetagger](https://gitlab.com/larvataggerpipelines/TrxmatRetagger) are processing pipelines that include LarvaTagger.jl with MaggotUBA-based tagger.
+
+They all rely on a Docker image of LarvaTagger and automate the deployment on various HPC clusters.
+
+# Tests
+
+Only three sub-projects only include automatic tests.
+
+On the Julia side, the lower-level functionalities are provided by the PlanarLarvae.jl project. This project features unit tests with high coverage, that are run on every commit.
+
+Similarly, the TidyObservables.jl project has unit tests and a GitLab workflow to run these tests on every commit.
+
+For the remaining part of the LarvaTagger project, high-level functional tests only are available.
+These tests are available in the LarvaTagger.jl project, in the test directory, file scenarii.sh. They depend on [shUnit2](https://github.com/kward/shunit2).
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