Commit a4df611f authored by Rayan  CHIKHI's avatar Rayan CHIKHI
Browse files

important fastp fix

parent 76f90e2a
......@@ -15,7 +15,7 @@ LOGTYPE_DEBUG = 'DEBUG'
def fastp(accession,folder,sdb,extra_args=""):
# Separate fastq files into paired- and single-end reads
#based on https://github.com/hawkjo/sequencetools/blob/master/clean_fastqs_in_subdirs.py
fastq_files = glob.glob(folder+"*.fastq")
fastq_files = glob.glob(folder+"/"+accession+"*.fastq")
pe_fastq_files = []
se_fastq_files = []
for fname in fastq_files:
......
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