cleanup fix

src/batch_processor.py

@@ -139,7 +139,8 @@ def process_file(accession, region):
         # cleanup. #(important when using a local drive)
         os.system(' '.join(["rm","-f","out/"+accession+"*.fastq"]))
         os.system(' '.join(["rm","-f",accession+".fastq"]))
-        os.system(' '.join(["rm","-f","public/sra/"+accession+".sra"]))
+        os.system(' '.join(["rm","-f","public/sra/"+accession+".sra"])) # maybe not the right path
+        os.system('rm -Rf ' + accession) # seems to be the right path
 
         endTime = datetime.now()
         diffTime = endTime - startTime
@@ -147,7 +148,6 @@ def process_file(accession, region):
         sdb_log(sdb,accession,'batch_dl_date',str(datetime.now()))
         logMessage(accession, "Serratus-batch-dl processing time - " + str(diffTime.seconds), LOGTYPE_INFO) 
 
-
 def main():
     accession = ""
     region = "us-east-1"