Commit ba287657 authored by Rayan's avatar Rayan
Browse files

cleanup fix

parent 8a224330
...@@ -139,7 +139,8 @@ def process_file(accession, region): ...@@ -139,7 +139,8 @@ def process_file(accession, region):
# cleanup. #(important when using a local drive) # cleanup. #(important when using a local drive)
os.system(' '.join(["rm","-f","out/"+accession+"*.fastq"])) os.system(' '.join(["rm","-f","out/"+accession+"*.fastq"]))
os.system(' '.join(["rm","-f",accession+".fastq"])) os.system(' '.join(["rm","-f",accession+".fastq"]))
os.system(' '.join(["rm","-f","public/sra/"+accession+".sra"])) os.system(' '.join(["rm","-f","public/sra/"+accession+".sra"])) # maybe not the right path
os.system('rm -Rf ' + accession) # seems to be the right path
endTime = datetime.now() endTime = datetime.now()
diffTime = endTime - startTime diffTime = endTime - startTime
...@@ -147,7 +148,6 @@ def process_file(accession, region): ...@@ -147,7 +148,6 @@ def process_file(accession, region):
sdb_log(sdb,accession,'batch_dl_date',str(datetime.now())) sdb_log(sdb,accession,'batch_dl_date',str(datetime.now()))
logMessage(accession, "Serratus-batch-dl processing time - " + str(diffTime.seconds), LOGTYPE_INFO) logMessage(accession, "Serratus-batch-dl processing time - " + str(diffTime.seconds), LOGTYPE_INFO)
def main(): def main():
accession = "" accession = ""
region = "us-east-1" region = "us-east-1"
......
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