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Riccardo PELLARIN
recursive-gmconvert
Commits
c6a1f9fa
Commit
c6a1f9fa
authored
Mar 05, 2018
by
samuel hanot
Browse files
add test
parent
ebc599c2
Changes
7
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test/3368/cutoff.txt
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test/3368/emd_3368.map
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test/3368/header/emd-3368.xml
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<?xml version="1.0" encoding="UTF-8"?>
<emdEntry
accessCode=
"3368"
version=
"1.9.6"
>
<admin>
<lastUpdate>
2016-07-13
</lastUpdate>
</admin>
<deposition>
<status>
REL
</status>
<depositionDate>
2016-03-08
</depositionDate>
<depositionSite>
PDBe
</depositionSite>
<processingSite>
PDBe
</processingSite>
<headerReleaseDate>
2016-04-13
</headerReleaseDate>
<mapReleaseDate>
2016-06-15
</mapReleaseDate>
<title>
Cryo-EM structure of yeast cytoplasmic exosome
</title>
<authors>
Liu JJ, Niu CY, Wu Y, Tan D, Wang Y, Ye MD, Liu Y, Zhao WW, Zhou K, Liu QS, Dai JB, Yang XR, Dong MQ, Huang N, Wang HW
</authors>
<keywords/>
<primaryReference
published=
"true"
>
<journalArticle>
<authors>
Liu JJ, Niu CY, Wu Y, Tan D, Wang Y, Ye MD, Liu Y, Zhao WW, Zhou K, Liu QS, Dai JB, Yang XR, Dong MQ, Huang N, Wang HW
</authors>
<articleTitle>
Cryo-EM structure of yeast cytoplasmic exosome
</articleTitle>
<journal>
cell research
</journal>
<volume>
26
</volume>
<firstPage>
822
</firstPage>
<lastPage>
837
</lastPage>
<year>
2016
</year>
<externalReference
type=
"pubmed"
>
27174052
</externalReference>
<externalReference
type=
"doi"
>
doi:10.1038/cr.2016.56
</externalReference>
</journalArticle>
</primaryReference>
</deposition>
<map>
<file
format=
"CCP4"
sizeKb=
"2849"
type=
"map"
>
emd_3368.map.gz
</file>
<dataType>
Image stored as Reals
</dataType>
<dimensions>
<numColumns>
90
</numColumns>
<numRows>
90
</numRows>
<numSections>
90
</numSections>
</dimensions>
<origin>
<originCol>
0
</originCol>
<originRow>
0
</originRow>
<originSec>
0
</originSec>
</origin>
<limit>
<limitCol>
89
</limitCol>
<limitRow>
89
</limitRow>
<limitSec>
89
</limitSec>
</limit>
<spacing>
<spacingCol>
90
</spacingCol>
<spacingRow>
90
</spacingRow>
<spacingSec>
90
</spacingSec>
</spacing>
<cell>
<cellA
units=
"A"
>
235.1772
</cellA>
<cellB
units=
"A"
>
235.1772
</cellB>
<cellC
units=
"A"
>
235.1772
</cellC>
<cellAlpha
units=
"degrees"
>
90.0
</cellAlpha>
<cellBeta
units=
"degrees"
>
90.0
</cellBeta>
<cellGamma
units=
"degrees"
>
90.0
</cellGamma>
</cell>
<axisOrder>
<axisOrderFast>
X
</axisOrderFast>
<axisOrderMedium>
Y
</axisOrderMedium>
<axisOrderSlow>
Z
</axisOrderSlow>
</axisOrder>
<statistics>
<minimum>
-0.04306174
</minimum>
<maximum>
0.09575678
</maximum>
<average>
0.00022029
</average>
<std>
0.00855643
</std>
</statistics>
<spaceGroupNumber>
1
</spaceGroupNumber>
<details>
::::EMDATABANK.org::::EMD-3368::::
</details>
<pixelSpacing>
<pixelX
units=
"A"
>
2.61308
</pixelX>
<pixelY
units=
"A"
>
2.61308
</pixelY>
<pixelZ
units=
"A"
>
2.61308
</pixelZ>
</pixelSpacing>
<contourLevel
source=
"author"
>
0.02
</contourLevel>
<annotationDetails>
Reconstruction of Exosome-RNA18 complex
</annotationDetails>
</map>
<supplement>
<maskSet/>
<sliceSet/>
<figureSet/>
<fscSet/>
</supplement>
<sample>
<numComponents>
1
</numComponents>
<name>
Exosome complex
</name>
<molWtTheo
units=
"MDa"
>
0.35
</molWtTheo>
<molWtMethod>
SDS-PAGE
</molWtMethod>
<molWtExp
units=
"MDa"
>
0.35
</molWtExp>
<sampleComponentList>
<sampleComponent
componentID=
"1"
>
<entry>
protein
</entry>
<sciName>
Exosome complex
</sciName>
<synName>
PM/Scl complex
</synName>
<molWtTheo
units=
"MDa"
>
0.35
</molWtTheo>
<molWtExp
units=
"MDa"
>
0.35
</molWtExp>
<protein>
<sciSpeciesName
ncbiTaxId=
"4932"
>
Saccharomyces cerevisiae
</sciSpeciesName>
<recombinantExpFlag>
false
</recombinantExpFlag>
<synSpeciesName>
Yeast
</synSpeciesName>
<externalReferences/>
<natSource/>
<engSource/>
</protein>
</sampleComponent>
</sampleComponentList>
</sample>
<experiment>
<vitrification>
<cryogenName>
ETHANE
</cryogenName>
<humidity>
100
</humidity>
<instrument>
FEI VITROBOT MARK IV
</instrument>
</vitrification>
<imaging>
<electronSource>
FIELD EMISSION GUN
</electronSource>
<imagingMode>
BRIGHT FIELD
</imagingMode>
<illuminationMode>
FLOOD BEAM
</illuminationMode>
<detector>
GATAN K2 SUMMIT (4k x 4k)
</detector>
<microscope>
FEI TITAN KRIOS
</microscope>
<date>
03-JAN-2015
</date>
<specimenHolderModel>
FEI TITAN KRIOS AUTOGRID HOLDER
</specimenHolderModel>
<acceleratingVoltage
units=
"kV"
>
300
</acceleratingVoltage>
</imaging>
<imageAcquisition/>
<fitting/>
<specimenPreparation>
<specimenState>
particle
</specimenState>
<specimenConc
units=
"mg/ml"
>
1.25
</specimenConc>
</specimenPreparation>
</experiment>
<processing>
<method>
singleParticle
</method>
<reconstruction>
<software>
EMAN2, IMAGIC, Relion-1.3
</software>
<ctfCorrection>
Ctffind3
</ctfCorrection>
<resolutionByAuthor>
13
</resolutionByAuthor>
<resolutionMethod>
FSC 0.143, gold-standard
</resolutionMethod>
</reconstruction>
<singleParticle>
<appliedSymmetry>
C1
</appliedSymmetry>
<numProjections>
55000
</numProjections>
</singleParticle>
</processing>
</emdEntry>
test/3368/header/map_analysis.txt
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)07[?1000h[?1002h[?1005l[?1015l[?1006h[1;1H[2J[1;1H[2J8 [?1000l [?1002l [?1006l
\ No newline at end of file
test/3368/images/EMD-3368.png
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test/3368/map/emd_3368.map.gz
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test/3368/resolution.txt
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13
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