diff --git a/README.md b/README.md index bd0fdba0233b061e61b6766ca4d2f0df3e72d252..c95011bc0b5c4c70bf7e546d973d55329d3d8759 100644 --- a/README.md +++ b/README.md @@ -15,6 +15,7 @@ gnuplot (www.gnuplot.info/) 3. if you need to run some commands before executing the scripts, place them in modules.sh ## usage: + ``` ${SRC_DIR}/recursive_gmconvert.sh -f map_filename -t threshold -n num_gaussians -N num_iterations [-i first_iteration] [-s] ``` @@ -49,7 +50,7 @@ The script creates a sub-directory (called `i`) for each recursion level `i`, an ## other scripts: -`get_maps.sh` is used to run a batch of `recursive_gmconvert.sh` on a list of emdb entries. It will fetch the data from the emdb and run the divide-and-conquer GMM calculation. +`get_maps.sh` is used to run a batch of `recursive_gmconvert.sh` on a list of emdb entries read from standard input. It will fetch the data from the emdb and run the divide-and-conquer GMM calculation. Example 1: `get_maps.sh -n 2 -N 2 -s <<< 1883` Example 2: `get_maps.sh -n 2 -N 2 -s < input.txt`