Merge branch 'dev' of gitlab.pasteur.fr:statistical-genetics/jass into dev

jass/server.py

@@ -294,6 +294,35 @@ class ProjectLocalManhattanMethodView(MethodView):
                 abort(500)
 
 
+@blp_projects.route("/<project_id>/heatmap/<chromosome>/<region>")
+class ProjectLocalHeatmapMethodView(MethodView):
+    def get(self, project_id, chromosome, region):
+        try:
+            return (
+                Project(id=project_id).get_project_local_heatmap_data(
+                    chromosome, region
+                ),
+                200,
+                {"Content-Type": "text/plain; charset=utf-8"},
+            )
+        except FileNotFoundError:
+            status = Project(id=project_id).status
+            if status == Project.DOES_NOT_EXIST:
+                return (
+                    f"project {project_id} does not exist",
+                    404,
+                    {"Content-Type": "text/plain; charset=utf-8"},
+                )
+            elif status["worktable"] == Project.CREATING:
+                return (
+                    "data not ready yet",
+                    202,
+                    {"Content-Type": "text/plain; charset=utf-8"},
+                )
+            else:
+                abort(500)
+
+
 @blp_projects.route("/<project_id>/zoom_manhattan")
 class ProjectZoomManhattanMethodView(MethodView):
     def get(self, project_id):

jass/swagger/swagger.yaml

@@ -116,7 +116,7 @@ paths:
                       "worktable": "READY"
                     progress":
                       "progress": "100"
-  /local_project:
+  /local_projects:
     post:
       description: |
         Create a new local project from a selection of phenotypes