diff --git a/docker-compose.test.yaml b/docker-compose.test.yaml index a48f841ce25304fcc703b3a778d1d262957b92d1..8c30f7691ce6711638fcb243144b7bca8b13d7ca 100644 --- a/docker-compose.test.yaml +++ b/docker-compose.test.yaml @@ -2,7 +2,7 @@ version: '3.4' services: celery: volumes: - - ./jass/test/data_test2:/data + - ./jass/test/data_real:/data back: volumes: - - ./jass/test/data_test2:/data \ No newline at end of file + - ./jass/test/data_real:/data \ No newline at end of file diff --git a/jass/test/data_real/COV.csv b/jass/test/data_real/COV.csv new file mode 100755 index 0000000000000000000000000000000000000000..bfba90f22d1136f93ff11338b11c033fe85a77dd --- /dev/null +++ b/jass/test/data_real/COV.csv @@ -0,0 +1,20 @@ + z_BCT_NEUT z_BCT_PLT z_BCT_MPV z_MAGIC_FAST-INSULIN z_MAGIC_FAST-GLUCOSE z_BCT_BASO z_BCT_LYMPH z_MAGIC_GLUCOSE-TOLERANCE z_BCT_MCHC z_BCT_MONO z_BCT_MCH z_BCT_MCV z_BCT_RBC z_BCT_HGB z_BCT_WBC z_BCT_RDW z_MAGIC_HBA1C z_BCT_EO z_BCT_HCT +z_BCT_NEUT 1.0484 0.2151 0.0178 0.0111 0.0012 0.1775 0.2078 0.0089 -0.0833 0.4061 -0.0542 -0.043 0.0519 -0.0023 0.9014 0.1002 0.0229 0.1207 0.0237 +z_BCT_PLT 0.2151 1.0159 -0.4641 0.0193 0.0121 0.1051 0.1413 0.0016 -0.0947 0.1328 -0.0878 -0.081 -0.0369 -0.1352 0.2499 0.1012 0.0447 0.1076 -0.111 +z_BCT_MPV 0.0178 -0.4641 1.014 -0.0005 -0.0075 -0.0048 0.0007 -0.0002 -0.0924 0.0217 -0.0875 -0.0643 0.0904 0.0167 0.0176 0.0445 -0.005 -0.0072 0.0452 +z_MAGIC_FAST-INSULIN 0.0111 0.0193 -0.0005 1.022 0.2337 -0.0035 0.0325 0.0686 0.0117 0.0163 -0.0074 -0.0171 0.0319 0.0337 0.0253 0.001 0.1061 -0.0088 0.033 +z_MAGIC_FAST-GLUCOSE 0.0012 0.0121 -0.0075 0.2337 1.0134 -0.0033 0.015 0.0597 0.0121 0.0042 -0.0015 -0.0085 0.0004 0.0062 -0.006 0.1491 -0.0054 -0.0018 +z_BCT_BASO 0.1775 0.1051 -0.0048 -0.0035 -0.0033 0.9829 0.2006 -0.02 0.1929 -0.0261 -0.0236 0.0167 -0.0047 0.2472 0.0368 0.0041 0.167 -0.0005 +z_BCT_LYMPH 0.2078 0.1413 0.0007 0.0325 0.015 0.2006 1.0076 0.0038 -0.0128 0.3033 0.013 0.0172 0.0918 0.1054 0.5676 -0.0118 0.0516 0.1901 0.1193 +z_MAGIC_GLUCOSE-TOLERANCE 0.0089 0.0016 -0.0002 0.0686 0.0597 0.0038 0.9874 0.0066 0.0064 0.0008 0.0018 0.0043 0.0058 0.0138 0.0007 0.049 0.0036 +z_BCT_MCHC -0.0833 -0.0947 -0.0924 0.0117 0.0121 -0.02 -0.0128 0.0066 1.0226 -0.0265 0.631 0.3387 -0.2346 0.3085 -0.0823 -0.321 -0.0406 -0.0376 0.0202 +z_BCT_MONO 0.4061 0.1328 0.0217 0.0163 0.0042 0.1929 0.3033 0.0064 -0.0265 1.0185 -0.0136 -0.0134 0.0387 0.0213 0.5276 0.0708 0.0196 0.1965 0.033 +z_BCT_MCH -0.0542 -0.0878 -0.0875 -0.0074 -0.0015 -0.0261 0.013 0.0008 0.631 -0.0136 1.0254 0.8935 -0.5316 0.2895 -0.0428 -0.4392 -0.0883 -0.0365 0.1186 +z_BCT_MCV -0.043 -0.081 -0.0643 -0.0171 -0.0085 -0.0236 0.0172 0.0018 0.3387 -0.0134 0.8935 1.0259 -0.587 0.2543 -0.0312 -0.456 -0.0842 -0.0268 0.1619 +z_BCT_RBC 0.0519 -0.0369 0.0904 0.0319 0.0167 0.0918 0.0043 -0.2346 0.0387 -0.5316 -0.587 1.0307 0.5848 0.0796 0.1764 0.0797 0.031 0.7022 +z_BCT_HGB -0.0023 -0.1352 0.0167 0.0337 0.0004 -0.0047 0.1054 0.0058 0.3085 0.0213 0.2895 0.2543 0.5848 1.0261 0.0401 -0.2742 0.0107 0.0033 0.9667 +z_BCT_WBC 0.9014 0.2499 0.0176 0.0253 0.0062 0.2472 0.5676 0.0138 -0.0823 0.5276 -0.0428 -0.0312 0.0796 0.0401 1.0443 0.0898 0.0363 0.2456 0.0699 +z_BCT_RDW 0.1002 0.1012 0.0445 0.001 -0.006 0.0368 -0.0118 0.0007 -0.321 0.0708 -0.4392 -0.456 0.1764 -0.2742 0.0898 1.017 0.0621 0.0203 -0.1813 +z_MAGIC_HBA1C 0.0229 0.0447 -0.005 0.1061 0.1491 0.0041 0.0516 0.049 -0.0406 0.0196 -0.0883 -0.0842 0.0797 0.0107 0.0363 0.0621 1.0163 0.0215 0.0236 +z_BCT_EO 0.1207 0.1076 -0.0072 -0.0088 -0.0054 0.167 0.1901 0.0036 -0.0376 0.1965 -0.0365 -0.0268 0.031 0.0033 0.2456 0.0203 0.0215 1.0084 0.0147 +z_BCT_HCT 0.0237 -0.111 0.0452 0.033 -0.0018 -0.0005 0.1193 0.0202 0.033 0.1186 0.1619 0.7022 0.9667 0.0699 -0.1813 0.0236 0.0147 1.0231 diff --git a/jass/test/data_real/GEN_COV.csv b/jass/test/data_real/GEN_COV.csv new file mode 100755 index 0000000000000000000000000000000000000000..ce848618232bfd1c7dcd443492a9c06f58efb2a1 --- /dev/null +++ b/jass/test/data_real/GEN_COV.csv @@ -0,0 +1,20 @@ + "z_BCT_NEUT" "z_BCT_PLT" "z_BCT_MPV" "z_MAGIC_FAST-INSULIN" "z_MAGIC_FAST-GLUCOSE" "z_BCT_BASO" "z_BCT_LYMPH" "z_MAGIC_GLUCOSE-TOLERANCE" "z_BCT_MCHC" "z_BCT_MONO" "z_BCT_MCH" "z_BCT_MCV" "z_BCT_RBC" "z_BCT_HGB" "z_BCT_WBC" "z_BCT_RDW" "z_MAGIC_HBA1C" "z_BCT_EO" "z_BCT_HCT" +"z_BCT_NEUT" "0.7632" "-0.0232" "0.0148" "0.0038" "-0.0782" "0.0444" "0.0787" "0.0723" "-0.0391" "0.3514" "0.0236" "0.0329" "-0.0251" "-0.0328" "0.6476" "0.0414" "-0.1131" "0.1026" "-0.03" +"z_BCT_PLT" "-0.0232" "0.2673" "-0.1682" "0.0089" "-0.0061" "0.0371" "0.0095" "-0.0954" "-0.0312" "0.0161" "0.0106" "0.0179" "-0.023" "-0.0233" "0.0079" "-0.0281" "-0.1062" "0.044" "-0.0169" +"z_BCT_MPV" "0.0148" "-0.1682" "0.2126" "-0.0256" "0.0706" "0.0249" "-0.032" "0.1325" "0.0607" "0.0259" "0.0253" "0.0146" "-0.0287" "-0.0141" "-0.0048" "-0.0008" "0.061" "-0.0166" "-0.0265" +"z_MAGIC_FAST-INSULIN" "0.0038" "0.0089" "-0.0256" "0.084" "0.0083" "0.0495" "-0.0329" "0.0642" "-0.0187" "-0.0008" "0.0692" "0.1071" "-0.0958" "-0.0332" "-0.0268" "-0.0078" "-0.0327" "0.1597" "-0.0367" +"z_MAGIC_FAST-GLUCOSE" "-0.0782" "-0.0061" "0.0706" "0.0083" "0.104" "-0.0292" "-0.0791" "0.1292" "-0.008" "0.0076" "-0.0125" "0.0045" 0 "0.0147" "-0.0988" "0.0267" "-0.0136" "0.0006" "0.016" +"z_BCT_BASO" "0.0444" "0.0371" "0.0249" "0.0495" "-0.0292" "0.0929" "0.0555" 0 "-0.0115" "0.0357" "-0.0063" "0.0097" "0.0052" "0.0112" "0.0482" "-0.0227" "-0.0978" "0.0185" "0.0146" +"z_BCT_LYMPH" "0.0787" "0.0095" "-0.032" "-0.0329" "-0.0791" "0.0555" "0.1428" "-0.1869" "-0.0119" "0.0822" "0.0138" "0.0161" "0.0013" "0.0044" "0.1082" "0.0058" "-0.0119" "0.014" "-0.0015" +"z_MAGIC_GLUCOSE-TOLERANCE" "0.0723" "-0.0954" "0.1325" "0.0642" "0.1292" 0 "-0.1869" "0.5264" "-0.0264" "-0.1072" "-0.0664" "-0.1083" "-0.0005" "-0.0325" "-0.0362" "0.0019" "-0.0033" "0.0502" 0 +"z_BCT_MCHC" "-0.0391" "-0.0312" "0.0607" "-0.0187" "-0.008" "-0.0115" "-0.0119" "-0.0264" "0.0884" "-0.0515" "0.051" "0.0364" "0.018" "0.0891" "-0.0616" "-0.02" "-0.0287" "0.0081" "0.0529" +"z_BCT_MONO" "0.3514" "0.0161" "0.0259" "-0.0008" "0.0076" "0.0357" "0.0822" "-0.1072" "-0.0515" "0.2808" "-0.0332" "-0.0207" "0.0369" "0.0012" "0.3188" "0.0367" "-0.0685" "0.0397" "0.011" +"z_BCT_MCH" "0.0236" "0.0106" "0.0253" "0.0692" "-0.0125" "-0.0063" "0.0138" "-0.0664" "0.051" "-0.0332" "0.1674" "0.1795" "-0.084" "0.0615" "0.0193" "-0.1075" "-0.1328" "-0.0081" "0.0307" +"z_BCT_MCV" "0.0329" "0.0179" "0.0146" "0.1071" "0.0045" "0.0097" "0.0161" "-0.1083" "0.0364" "-0.0207" "0.1795" "0.1588" "-0.0773" "0.0416" "0.0297" "-0.0818" "-0.1051" "-0.0085" "0.024" +"z_BCT_RBC" "-0.0251" "-0.023" "-0.0287" "-0.0958" 0 "0.0052" "0.0013" "-0.0005" "0.018" "0.0369" "-0.084" "-0.0773" "0.0753" "-0.0025" "-0.0162" "0.0326" "0.0424" "0.0062" "-0.0014" +"z_BCT_HGB" "-0.0328" "-0.0233" "-0.0141" "-0.0332" "0.0147" "0.0112" "0.0044" "-0.0325" "0.0891" "0.0012" "0.0615" "0.0416" "-0.0025" "0.1167" "-0.0217" "-0.0256" "-0.0335" "0.0044" "0.0952" +"z_BCT_WBC" "0.6476" "0.0079" "-0.0048" "-0.0268" "-0.0988" "0.0482" "0.1082" "-0.0362" "-0.0616" "0.3188" "0.0193" "0.0297" "-0.0162" "-0.0217" "0.6538" "0.0323" "-0.0789" "0.0908" "-0.0149" +"z_BCT_RDW" "0.0414" "-0.0281" "-0.0008" "-0.0078" "0.0267" "-0.0227" "0.0058" "0.0019" "-0.02" "0.0367" "-0.1075" "-0.0818" "0.0326" "-0.0256" "0.0323" "0.0729" "0.1619" "-0.0252" "-0.0218" +"z_MAGIC_HBA1C" "-0.1131" "-0.1062" "0.061" "-0.0327" "-0.0136" "-0.0978" "-0.0119" "-0.0033" "-0.0287" "-0.0685" "-0.1328" "-0.1051" "0.0424" "-0.0335" "-0.0789" "0.1619" "0.1765" "-0.0165" "-0.0146" +"z_BCT_EO" "0.1026" "0.044" "-0.0166" "0.1597" "0.0006" "0.0185" "0.014" "0.0502" "0.0081" "0.0397" "-0.0081" "-0.0085" "0.0062" "0.0044" "0.0908" "-0.0252" "-0.0165" "0.1145" "-0.0026" +"z_BCT_HCT" "-0.03" "-0.0169" "-0.0265" "-0.0367" "0.016" "0.0146" "-0.0015" 0 "0.0529" "0.011" "0.0307" "0.024" "-0.0014" "0.0952" "-0.0149" "-0.0218" "-0.0146" "-0.0026" "0.0808" diff --git a/jass/test/data_real/initTable.hdf5 b/jass/test/data_real/initTable.hdf5 new file mode 100644 index 0000000000000000000000000000000000000000..c0991ad580a4cea014ba80f654607884366a1d70 Binary files /dev/null and b/jass/test/data_real/initTable.hdf5 differ diff --git a/jass/test/data_real/regions.txt b/jass/test/data_real/regions.txt new file mode 100755 index 0000000000000000000000000000000000000000..4c56ac3869bfb3bd3135b7dbbd9a0bba64cd53fc --- /dev/null +++ b/jass/test/data_real/regions.txt @@ -0,0 +1,1268 @@ +chr start stop +chr1 10416 1212720 +chr1 1212898 2394236 +chr1 2394349 3613332 +chr1 3613382 4555271 +chr1 4555449 5231657 +chr1 5231819 5904729 +chr1 5904931 6508990 +chr1 6509048 8103874 +chr1 8103881 9473832 +chr1 9473862 10682922 +chr1 10682985 11302147 +chr1 11302491 12675791 +chr1 12675890 14283501 +chr1 14283521 14996626 +chr1 14996826 16099405 +chr1 16099438 17187817 +chr1 17188054 18255745 +chr1 18256147 19582933 +chr1 19583287 20219621 +chr1 20219685 21695683 +chr1 21695824 22948935 +chr1 22949148 23660413 +chr1 23660845 25165070 +chr1 25165080 27237278 +chr1 27237722 29310805 +chr1 29310980 30070714 +chr1 30070754 31347916 +chr1 31348018 31772732 +chr1 31772987 33638677 +chr1 33639018 34391267 +chr1 34391420 35704680 +chr1 35705022 37011779 +chr1 37011800 38597501 +chr1 38597533 40497747 +chr1 40497790 42108424 +chr1 42108510 43544802 +chr1 43544824 45451223 +chr1 45451602 47323528 +chr1 47323642 47742163 +chr1 47742283 49913892 +chr1 49913919 51823548 +chr1 51824311 52607124 +chr1 52607289 53920952 +chr1 53920970 55390313 +chr1 55390410 55667411 +chr1 55667434 57056931 +chr1 57057122 57496981 +chr1 57497464 58740370 +chr1 58740486 60407370 +chr1 60407547 61643830 +chr1 61644255 63196229 +chr1 63196240 64919363 +chr1 64919867 66572508 +chr1 66572765 67457257 +chr1 67457258 69098134 +chr1 69098317 70142467 +chr1 70142688 71743023 +chr1 71743034 73083898 +chr1 73083950 74336180 +chr1 74336280 75716810 +chr1 75716827 76646618 +chr1 76646739 78323661 +chr1 78323890 79124095 +chr1 79124184 80565990 +chr1 80566077 81407427 +chr1 81407434 82676494 +chr1 82676679 83814914 +chr1 83815021 85447880 +chr1 85448008 86688810 +chr1 86689053 88266840 +chr1 88267485 89967306 +chr1 89967670 91607958 +chr1 91608070 92941317 +chr1 92941861 94003987 +chr1 94004017 95407253 +chr1 95408334 96135049 +chr1 96135529 98075188 +chr1 98075731 99697249 +chr1 99697407 101008676 +chr1 101008824 102019030 +chr1 102019319 103128575 +chr1 103128658 104723013 +chr1 104723111 105184542 +chr1 105184750 106514701 +chr1 106514746 107952939 +chr1 107953122 109719192 +chr1 109719623 111262867 +chr1 111263098 112047679 +chr1 112047997 113851126 +chr1 113851156 115468353 +chr1 115468409 117165812 +chr1 117165855 118764439 +chr1 118764677 125046216 +chr1 125046239 147709457 +chr1 147709528 150187231 +chr1 150187364 151856850 +chr1 151856862 152888779 +chr1 152888973 154414549 +chr1 154414600 156668324 +chr1 156668358 157917665 +chr2 10103 1145774 +chr2 1145830 1734667 +chr2 1734683 3115918 +chr2 3115985 4421542 +chr2 4421871 5563652 +chr2 5563831 6401467 +chr2 6401574 7636468 +chr2 7637070 9227038 +chr2 9227203 10446626 +chr2 10446654 11423337 +chr2 11423581 12754001 +chr2 12754293 13361986 +chr2 13361998 14771981 +chr2 14771996 16144272 +chr2 16144337 16425328 +chr2 16425833 18024826 +chr2 18024965 19532385 +chr2 19532436 20726160 +chr2 20726391 22312694 +chr2 22312730 23973470 +chr2 23973574 25485967 +chr2 25486615 27392427 +chr2 27392522 29155057 +chr2 29155405 30107232 +chr2 30107302 31001628 +chr2 31002122 32297249 +chr2 32297283 33745889 +chr2 33745919 34850851 +chr2 34850935 35407820 +chr2 35407828 36658915 +chr2 36659051 37681307 +chr2 37681368 39090638 +chr2 39090770 40427115 +chr2 40427161 41766915 +chr2 41766945 43173725 +chr2 43173770 44605717 +chr2 44606030 45307518 +chr2 45307520 46482387 +chr2 46482432 47623938 +chr2 47623972 48907657 +chr2 48907774 50181585 +chr2 50181713 51392194 +chr2 51392570 52157991 +chr2 52158008 53010234 +chr2 53010246 53775404 +chr2 53775422 55196173 +chr2 55196719 55631106 +chr2 55631107 56933455 +chr2 56933528 58422009 +chr2 58422202 60125077 +chr2 60125131 61309306 +chr2 61309522 63659958 +chr2 63660687 65265206 +chr2 65265352 67051066 +chr2 67051350 68534771 +chr2 68534869 69501720 +chr2 69502045 70778954 +chr2 70778984 72169437 +chr2 72169468 74120751 +chr2 74120790 75813593 +chr2 75813603 77133613 +chr2 77133682 77964098 +chr2 77964218 79309279 +chr2 79309434 79973214 +chr2 79973291 81286122 +chr2 81286506 82439032 +chr2 82439274 83412294 +chr2 83412306 84373310 +chr2 84373389 85983778 +chr2 85983976 88898220 +chr2 88898329 96892135 +chr2 96892229 99625141 +chr2 99625344 101167405 +chr2 101167653 102538135 +chr2 102538610 103502766 +chr2 103502815 104605989 +chr2 104606281 105697748 +chr2 105697819 107061033 +chr2 107061046 107651748 +chr2 107651903 109376031 +chr2 109376274 110937235 +chr2 110937379 112719844 +chr2 112719868 113629942 +chr2 113630330 115216872 +chr2 115216878 116890286 +chr2 116890409 118570585 +chr2 118571478 120145941 +chr2 120145945 121184526 +chr2 121184623 122795689 +chr2 122796188 124209640 +chr2 124209686 125674586 +chr2 125674609 127110233 +chr2 127110239 128684790 +chr2 128684978 129773861 +chr2 129774491 130976341 +chr2 130976349 132545252 +chr2 132545614 134160171 +chr2 134160240 135795535 +chr2 135795612 137200187 +chr2 137200222 138605457 +chr3 11816 955569 +chr3 955622 1524721 +chr3 1524728 2022666 +chr3 2022772 2694847 +chr3 2694928 3273685 +chr3 3273708 3942146 +chr3 3942210 5077116 +chr3 5077461 5993160 +chr3 5993186 7083884 +chr3 7083893 7573834 +chr3 7573917 8580914 +chr3 8581030 9427971 +chr3 9428032 10923250 +chr3 10923279 11909100 +chr3 11909180 13071382 +chr3 13071428 14514620 +chr3 14514667 15508865 +chr3 15509103 16676413 +chr3 16676478 17982704 +chr3 17983001 19575247 +chr3 19575308 20961963 +chr3 20962214 22007388 +chr3 22007558 22527434 +chr3 22527456 23496921 +chr3 23497685 24672603 +chr3 24672606 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+"32888493-GCST90002327-EFO_0004528_MCHC_AFR.h.tsv.gz" "BCT" "MCHC" "Mean corpuscular hemoglobin concentration" "Cellular" "Chen MH et al. 2020" "https://pubmed.ncbi.nlm.nih.gov/32888493/" "http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90002001-GCST90003000/GCST90002327/harmonised/32888493-GCST90002327-EFO_0004528.h.tsv.gz" 12766 36221496 "hm_rsid" "hm_pos" "hm_chrom" "hm_effect_allele" "hm_other_allele" "hm_effect_allele_frequency" "p_value" "hm_beta" "standard_error" "rs-number" +"32888493-GCST90002333-EFO_0004526_MCV_AFR.h.tsv.gz" "BCT" "MCV" "Mean corpuscular volume" "Cellular" "Chen MH et al. 2020" "https://pubmed.ncbi.nlm.nih.gov/32888493/" "http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90002001-GCST90003000/GCST90002333/harmonised/32888493-GCST90002333-EFO_0004526.h.tsv.gz" 14222 36679766 "hm_rsid" "hm_pos" "hm_chrom" "hm_effect_allele" "hm_other_allele" "hm_effect_allele_frequency" "p_value" "hm_beta" "standard_error" "rs-number" +"32888493-GCST90002339-EFO_0005091_MONO_AFR.h.tsv.gz" "BCT" "MONO" "Monocyte count" "Cellular" "Chen MH et al. 2020" "https://pubmed.ncbi.nlm.nih.gov/32888493/" "http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90002001-GCST90003000/GCST90002339/harmonised/32888493-GCST90002339-EFO_0005091.h.tsv.gz" 13471 36452625 "hm_rsid" "hm_pos" "hm_chrom" "hm_effect_allele" "hm_other_allele" "hm_effect_allele_frequency" "p_value" "hm_beta" "standard_error" "rs-number" diff --git a/jass/test/data_real/worktable.hdf5 b/jass/test/data_real/worktable.hdf5 new file mode 100644 index 0000000000000000000000000000000000000000..6c0162e61d22b93316dfe293a05b5b47d6c68fe4 Binary files /dev/null and b/jass/test/data_real/worktable.hdf5 differ diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr1.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr1.txt new file mode 100644 index 0000000000000000000000000000000000000000..ff41062a5503fcb526741aea344960ac220290d6 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr1.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs4245756 864083 T C -0.04049310995184843 0.9677 +rs13129 1055459 T C 0.7063025628400874 0.48 +rs4073175 1069566 A G 0.8495056277842093 0.3956 +rs116413370 1070770 A G 0.6123593960050733 0.5403 +rs72900494 1071101 A C 0.5720324364336533 0.5673 +rs72900497 1071133 A G 0.5252635391740585 0.5994 +rs56945342 1072814 T C 0.615840188747972 0.538 +rs114845730 1073612 T C 0.8554537467691244 0.3923 +rs78919234 1075450 G A 0.8421571415880913 0.3997 +rs112343466 1075479 A G 0.8421571415880913 0.3997 +rs57133173 1080338 A G 0.35926079533585376 0.7194 +rs6604975 1081492 A G 0.8142530501940454 0.4155 +rs6604976 1081587 A G 0.8088524892428803 0.4186 +rs6667248 1081836 G A 0.2952538082853543 0.7678 +rs12096277 1082218 G A 0.8667116876184988 0.3861 +rs7549954 1085334 T C 0.8253022760013875 0.4092 +rs11260587 1086028 A G 0.9144127590665815 0.3605 +rs11260588 1086278 A G 0.9021070578956627 0.367 +rs115958433 1147157 G A 0.004386613548709897 0.9965 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr10.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr10.txt new file mode 100644 index 0000000000000000000000000000000000000000..e9da9c7104f522c528f931557a93222ff10324d0 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr10.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs184038273 85640 G A -0.4450273351186715 0.6563 +rs116091256 88234 A G -0.44738098876906346 0.6546 +rs9419554 89297 A G 0.23978104790857352 0.8105 +rs9419555 90196 A G -0.01190676563766115 0.9905 +rs141986392 98954 C A -0.003007958465459176 0.9976 +rs79349032 99341 C A 0.27020830993994516 0.787 +rs9419558 102864 C T -0.0 1.0 +rs9419559 102866 C T -0.0 1.0 +rs112431531 107782 G T -0.17777459470700946 0.8589 +rs114622828 110302 C A -0.17777459470700946 0.8589 +rs9419476 111040 G A -0.010778710290106236 0.9914 +rs58113202 114085 T C -0.05341657390313892 0.9574 +rs150425854 114445 G A 0.9541652531461889 0.34 +rs9419417 115247 T C 1.0938973526034301 0.274 +rs146984218 126748 A G 0.6502976109282561 0.5155 +rs116193599 128442 G A 0.6458137223817754 0.5184 +rs140464648 130980 A G 0.5878991306756151 0.5566 +rs114996501 136359 A G 0.6882426341516656 0.4913 +rs116516502 144543 C T 0.7933052479323583 0.4276 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr11.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr11.txt new file mode 100644 index 0000000000000000000000000000000000000000..dbc22c8192d576bf54941563574ac74b50a5be89 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr11.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs10400290 203892 A G 0.6096404653317089 0.5421 +rs73386645 205838 T C 0.6608632746903897 0.5087 +rs185553134 206984 A G -0.08469986914787081 0.9325 +rs74044911 212202 T C 0.47947605338131394 0.6316 +rs73386658 218811 A G 0.24765674740168503 0.8044 +rs78217432 219983 T C 0.24713984252410193 0.8048 +rs13328840 220345 G A 0.27684386187396326 0.7819 +rs56407328 221807 C T 0.4626712903484402 0.6436 +rs116755906 222621 A G 0.6407271059265698 0.5217 +rs114769259 222625 A G 0.22754497664114942 0.82 +rs59986826 225823 A G 0.2512769432835269 0.8016 +rs144276621 227308 T C 0.5066505970769293 0.6124 +rs58643462 228910 A C 0.2791887196681099 0.7801 +rs150716073 229355 T G -0.8799248901549968 0.3789 +rs73394716 234839 A C 0.24223251733170045 0.8086 +rs116301602 235482 C A -0.871648799505145 0.3834 +rs1056098 235619 C A 0.21867913946161208 0.8269 +rs61109871 235737 G T 0.27150845201783874 0.786 +rs73394724 237248 T C 0.3496518412286769 0.7266 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr12.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr12.txt new file mode 100644 index 0000000000000000000000000000000000000000..fdf59a5ce1354f13fb9d28c17bac14840314a3a8 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr12.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs112469599 79525 T C -2.0152353044738702 0.04388 +rs115367131 80881 A G -0.8112885219742961 0.4172 +rs74570921 85685 A G 0.6839606723506821 0.494 +rs76981648 91812 A G 0.8540090048727714 0.3931 +rs144323695 103000 T C -2.5354592289782096 0.01123 +rs74054885 109389 G T 1.1287578451832971 0.259 +rs57212972 120335 T C -2.152474519960708 0.03136 +rs2368788 120519 T G 0.47245787896983943 0.6366 +rs60425136 126995 C T 1.3058605041009874 0.1916 +rs12312097 127246 T C 0.7919325608479766 0.4284 +rs12313653 127668 T C -1.1399671192861693 0.2543 +rs12298934 127691 A G -1.24074490492429 0.2147 +rs59356318 128298 G A -0.9324577725468705 0.3511 +rs4980846 142668 C T 1.9550260129615733 0.05058 +rs73603120 143399 A G 0.7046951021736433 0.481 +rs7135530 148770 A C 1.2596379466580236 0.2078 +rs74055585 151573 C T 1.1697539506936918 0.2421 +rs3847945 153917 A C 1.3419876501443952 0.1796 +rs60745567 154696 T C 0.809548008311427 0.4182 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr13.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr13.txt new file mode 100644 index 0000000000000000000000000000000000000000..c3623501f001ac7f5a798ffa51e1bf1f29172cd3 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr13.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs9578324 18690236 A G -2.1369753080355762 0.0326 +rs9578337 18703908 T C -0.7609281227737837 0.4467 +rs116805056 18716995 A G -0.8667116876184988 0.3861 +rs145102868 18717150 T C -0.8572621890810385 0.3913 +rs11838759 18717765 G A -0.8630681468150759 0.3881 +rs182081154 18718164 A C -0.8630681468150759 0.3881 +rs145580380 18858426 A C -0.3987193614907638 0.6901 +rs190934724 18907778 G A 0.10824670166073914 0.9138 +rs113998140 18944198 T G -1.960306301017513 0.04996 +rs56939816 18946700 G A -0.9077695298680555 0.364 +rs191023746 18948134 A C 1.7189690920744372 0.08562 +rs140888886 18954254 G A -0.6781130768657821 0.4977 +rs73439853 18964095 C T -1.3728467297778202 0.1698 +rs77015387 18964924 G T -0.45612513028509727 0.6483 +rs73439859 18965971 A G -0.8729322623983911 0.3827 +rs73439868 18968056 C T -0.9338137025539052 0.3504 +rs9580721 18969400 G A -1.1479238535314245 0.251 +rs57500788 18975296 T C -1.3376823713208712 0.181 +rs143291337 18977459 A G -1.7142108986903783 0.08649 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr14.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr14.txt new file mode 100644 index 0000000000000000000000000000000000000000..524ac9f3e093edfec0d191c316c2a609fc5efb11 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr14.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs73571304 19974162 G A -0.517653567562213 0.6047 +rs57711077 19974407 C A -0.2998389547254075 0.7643 +rs28685669 19974877 T C 1.8774240340849726 0.06046 +rs115091581 19976937 T C 0.967288161831025 0.3334 +rs7150745 19977686 T C 0.8205546293762519 0.4119 +rs28630531 19978098 A G 0.8205546293762519 0.4119 +rs60953949 19980214 T C -0.8389453101197266 0.4015 +rs58716355 19982567 C T -0.3655511933493867 0.7147 +rs1959607 19984301 C T -0.3905904307893181 0.6961 +rs28712501 19986000 G A 2.58143681632574 0.009839 +rs2318559 19987730 A G 2.063870462342941 0.03903 +rs7144309 19990148 G A 1.8194027990483044 0.06885 +rs58689871 19993090 A G -1.081218343965916 0.2796 +rs58390960 19993411 T C -1.1104619865086307 0.2668 +rs2318561 19995521 T C 2.1132427033417986 0.03458 +rs114222595 19995732 A C -0.38694084763101166 0.6988 +rs73571368 19998727 A G -0.9690905745590217 0.3325 +rs871725 19998955 G A 2.107087449780935 0.03511 +rs884451 19999171 G A -1.1104619865086307 0.2668 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr15.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr15.txt new file mode 100644 index 0000000000000000000000000000000000000000..dddb9c1d40ef78f0c79a4af5ca568e549645ae06 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr15.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs112562494 23436530 A G -2.0673625959247444 0.0387 +rs112450607 23438207 T C -1.288419426328654 0.1976 +rs28691768 23439271 T C -1.2938998972954316 0.1957 +rs140591462 23441534 C T -1.049821909626406 0.2938 +rs112742309 23441583 T G -2.0654546738102444 0.03888 +rs73423916 23442561 A C -1.8343638634790997 0.0666 +rs113876688 23442829 A G -1.8400561102115172 0.06576 +rs56854950 23443190 A G 2.4190757396347857 0.01556 +rs11856020 23443197 T G -1.3052727193577864 0.1918 +rs113685354 23444089 T C -1.124030705437496 0.261 +rs111541638 23444317 A G -1.1090699664503993 0.2674 +rs143079147 23446014 C A -2.100441745889791 0.03569 +rs17118818 23446257 A G -0.8532873020216867 0.3935 +rs77168685 23446850 A G -1.6095322913580103 0.1075 +rs112047284 23448472 C T -2.103638418549175 0.03541 +rs28555570 23449563 T C -0.877896295051228 0.38 +rs140135687 23454141 T C -1.3802814635399951 0.1675 +rs11852762 23456938 A C -1.6385836487175178 0.1013 +rs17118742 23459484 T C 1.043536251933417 0.2967 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr16.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr16.txt new file mode 100644 index 0000000000000000000000000000000000000000..757ceb3cefe2019a50995184ba5a8d587050c06b --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr16.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs2541687 34780 A G -0.5362294244260526 0.5918 +rs2562134 35187 T C -0.16073769388405626 0.8723 +rs2541692 35704 T G -0.15870664828199674 0.8739 +rs2541695 36756 A G -0.2784069304634273 0.7807 +rs148182028 37829 G A 0.5055109635766958 0.6132 +rs798668 38087 G A -0.2791887196681099 0.7801 +rs2541696 38165 A C 1.7057212031245688 0.08806 +rs798669 38553 A G -0.20483633197981727 0.8377 +rs150983641 39681 T C 0.7631063052820063 0.4454 +rs798671 40070 A G -0.08696416039995115 0.9307 +rs2562140 40599 C T -0.08319058358121413 0.9337 +rs149364779 41622 G A 0.7532494982074577 0.4513 +rs60771648 41922 A G 1.741705440704517 0.08156 +rs8053008 42976 C T 1.6257633862332366 0.104 +rs216584 44048 G A -0.0938856413442847 0.9252 +rs146240039 44117 A G 1.0758373610404246 0.282 +rs144123717 44126 A G 1.0945815550269058 0.2737 +rs57827257 44853 A G 1.091620367434161 0.275 +rs143769415 52581 T C 0.1826151452341984 0.8551 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr17.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr17.txt new file mode 100644 index 0000000000000000000000000000000000000000..c84462fc93943ff7904d9499b65a0a96dd2f057f --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr17.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs34845611 151604 T C -0.8516650931838564 0.3944 +rs139915273 154787 C T 0.27645320053727657 0.7822 +rs149792888 156491 A G 1.8123638157361628 0.06993 +rs111371606 158997 C T 1.183023081256737 0.2368 +rs144418494 160286 A G -1.0392252282446652 0.2987 +rs113247765 164887 C A 0.8639779565455246 0.3876 +rs144220793 165614 A G -0.9174631391722124 0.3589 +rs143331292 166060 T G -0.9174631391722124 0.3589 +rs141283065 166099 T C -0.9174631391722124 0.3589 +rs112254317 168867 G A 0.8923600071077118 0.3722 +rs148525551 172517 T G -0.16759742131271366 0.8669 +rs78727535 177618 A G 0.30823962886329914 0.7579 +rs151226741 177735 A G 2.330305694664385 0.01979 +rs143155804 178043 C T 2.2707849411182766 0.02316 +rs144218289 178273 A G 2.2621198420181607 0.02369 +rs148804384 178301 G A 2.2501409392985656 0.02444 +rs112537445 178436 G A -0.4023859615315386 0.6874 +rs144351589 178535 A G 2.218951856860838 0.02649 +rs139498593 178704 G A 2.2145640770969273 0.02679 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr18.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr18.txt new file mode 100644 index 0000000000000000000000000000000000000000..aa8e4ce4c4b5bbb32769415d8f805c7daa79aec6 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr18.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs114380142 140670 T C 0.27020830993994516 0.787 +rs113995585 169252 A G -0.004887944599258071 0.9961 +rs3859369 180069 G T -0.15426600562774204 0.8774 +rs28463286 185127 C T -0.056805666518803616 0.9547 +rs141844059 189606 T C 1.1254462071059335 0.2604 +rs116443871 190651 A G -0.11455228714160764 0.9088 +rs115907518 190653 T C -0.1084988407938276 0.9136 +rs149038606 194853 T C -0.11455228714160764 0.9088 +rs147838874 203758 T C -0.019302236240380063 0.9846 +rs115911406 204518 C T -0.024065954281736128 0.9808 +rs115627554 207573 A G -0.1308423759131046 0.8959 +rs111488741 214930 C T -0.1709030479590889 0.8643 +rs114579562 221175 C T -0.2084213339362423 0.8349 +rs192680454 222229 G A -0.13210656918188257 0.8949 +rs114978329 243219 C T -0.22355960323802784 0.8231 +rs115159155 244768 T C -0.21264996012604065 0.8316 +rs115850020 246677 G A -0.21149632446628394 0.8325 +rs116668286 248266 G A -0.06295793605653408 0.9498 +rs145576879 267768 T C -0.15261740321563677 0.8787 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr19.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr19.txt new file mode 100644 index 0000000000000000000000000000000000000000..85d0b293e9719e1cbc76d6a60c53b05f4a4ce2d0 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr19.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs73496485 287225 G A -0.12654567019701485 0.8993 +rs11880251 301982 G A 0.14070879097821795 0.8881 +rs73916873 304475 A G 0.21701070801255576 0.8282 +rs73916875 304667 A G 0.15261740321563677 0.8787 +rs112357940 306329 A G -0.22651614967907158 0.8208 +rs35042658 307282 C T -0.21072739046666422 0.8331 +rs59415447 308681 A G 0.06735386014654199 0.9463 +rs141796926 318914 A G 0.4469654583680185 0.6549 +rs114812045 319373 C A 0.3796570583262634 0.7042 +rs10415364 322645 A G -0.4671396052241298 0.6404 +rs73916891 324920 C T 0.3573898155774039 0.7208 +rs116371303 326179 A G 0.29041339153032225 0.7715 +rs7251819 326250 T C -0.6222157666688276 0.5338 +rs148538249 331838 A G 0.38572546670924623 0.6997 +rs75204856 336854 C T -0.049275178713589794 0.9607 +rs7246156 337333 T C 0.5350721024308537 0.5926 +rs58214569 339228 G T 0.5564547790271799 0.5779 +rs74871213 347826 T C 0.7121046096795448 0.4764 +rs116193298 389607 A G 0.19384148844586968 0.8463 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr2.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr2.txt new file mode 100644 index 0000000000000000000000000000000000000000..4d9070dfbbfe269bc5ef26aba624574c89cdce07 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr2.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs143146982 13181 T C 1.0524350387841914 0.2926 +rs73138526 13637 G A 0.2939449099617718 0.7688 +rs112288223 15937 G A 0.5156483995948551 0.6061 +rs114844818 16187 T C 0.8039947621813791 0.4214 +rs116605203 16493 A G 0.7873107128464281 0.4311 +rs112063427 20329 T C 0.10446543126475874 0.9168 +rs7559233 22215 G A 1.0047858060706991 0.315 +rs79450304 24363 G A 0.18095869157123212 0.8564 +rs115471281 25192 T C 1.491996739854321 0.1357 +rs76263041 25213 G T 0.18669471508394755 0.8519 +rs115709817 27332 T C 1.1645529457001371 0.2442 +rs116170552 27499 A G 0.2884530035645208 0.773 +rs116577140 27641 G A 1.2563199269053964 0.209 +rs56921550 28258 G T -0.16454769908232228 0.8693 +rs116760537 31658 C A 0.17128458593150667 0.864 +rs75087018 32946 T C 0.5892404290471948 0.5557 +rs78328985 33433 A C 1.3864812556973196 0.1656 +rs79720199 34831 C A 0.21893587514450796 0.8267 +rs73138590 35070 C T 0.871648799505145 0.3834 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr20.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr20.txt new file mode 100644 index 0000000000000000000000000000000000000000..c0336bd8bd6375043e2e82603932fed951d0821b --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr20.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs75670495 83092 T C -0.09237512787644478 0.9264 +rs76107804 87000 T C -0.5965617726524285 0.5508 +rs60878529 87623 C T 0.4448889617756773 0.6564 +rs6040382 90438 T C 1.5341205443525463 0.125 +rs6040395 90452 A G 0.7010048315295425 0.4833 +rs143912933 111439 C T 0.8149516264832889 0.4151 +rs116171563 112686 C T 0.49698447408951785 0.6192 +rs75428117 116730 A G 0.6196321426976155 0.5355 +rs76760245 117806 G T 0.1921815467967615 0.8476 +rs80150033 118100 T C 0.4699370400609875 0.6384 +rs115482354 121800 C T -0.19269224146287262 0.8472 +rs57572545 130234 T C 0.5261269570415803 0.5988 +rs74957717 137581 G A 0.5739524185685733 0.566 +rs75836080 137894 A G 0.5780949741889856 0.5632 +rs79131632 141870 C T 0.6030130616699736 0.5465 +rs117815495 148434 T C 2.0855434323766255 0.03702 +rs4815966 148972 G A -0.5030914182737232 0.6149 +rs73892034 149298 G A -0.4784920940264127 0.6323 +rs1592156 150854 T C -0.09690731452396961 0.9228 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr21.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr21.txt new file mode 100644 index 0000000000000000000000000000000000000000..e8ae46ed67cfbebe92539a26873aef609c05cd58 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr21.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs7280495 13301529 C T -0.59058278834926 0.5548 +rs73891602 13406181 C T -0.38653565723466815 0.6991 +rs147649438 13419455 A G -0.3824872288680825 0.7021 +rs141175223 13422468 A G -0.39709148342762385 0.6913 +rs114033059 13571250 C T -0.5304499524708746 0.5958 +rs1297078 13998294 T C 0.6479767316243344 0.517 +rs139639182 14002903 A G 0.39844797521112246 0.6903 +rs79073717 14077602 G A -0.3419347465523953 0.7324 +rs141871761 14081105 A C -1.17573697087842 0.2397 +rs114322999 14083322 A G 1.9649502147608995 0.04942 +rs73894204 14084334 A C -1.1301809148076671 0.2584 +rs60539781 14084553 A C -1.1268639673687193 0.2598 +rs148689163 14085683 T C -1.073158515928843 0.2832 +rs145886903 14086519 G A -0.2029168805277457 0.8392 +rs116344414 14087474 T C 1.9587676820265092 0.05014 +rs74812560 14090793 A G -0.24003902921719875 0.8103 +rs139549929 14091898 C T 2.1055897935139716 0.03524 +rs142410563 14092120 A G 2.1022657848277206 0.03553 +rs113746514 14092224 A G -0.2348824131868153 0.8143 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr22.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr22.txt new file mode 100644 index 0000000000000000000000000000000000000000..31ab28d6a69cd7b8680699bf4458e66b57172640 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr22.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs7293182 16416156 A G -0.022185480028456217 0.9823 +rs4010560 16416625 G A 0.17344710717920575 0.8623 +rs144010528 16417607 A G 0.09955200363213462 0.9207 +rs116324977 16417683 T C 0.14577374870455034 0.8841 +rs73876603 16799541 G A -0.5165075029682709 0.6055 +rs76276024 16801649 C T -0.5303056932455966 0.5959 +rs9618886 16809968 C T 0.23372303968598762 0.8152 +rs8140802 16815810 A C -0.22407364414648778 0.8227 +rs9618891 16818069 C T -0.15870664828199674 0.8739 +rs9618893 16820602 A G -0.16378550870130862 0.8699 +rs9618894 16821381 A G 0.5397057122253225 0.5894 +rs6518618 16828627 T C -0.19537421638066224 0.8451 +rs6518619 16828665 G A -0.15693002055706112 0.8753 +rs28378217 16831059 G T 0.5242567129465923 0.6001 +rs150223787 16831399 A G 0.7255739426980664 0.4681 +rs7290891 16834732 C T 0.8955371798674986 0.3705 +rs60757822 16835651 C T 0.2704683017476281 0.7868 +rs116284127 16836501 A G 1.3516103424631831 0.1765 +rs9617918 16839900 C T 0.35966188301727664 0.7191 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr3.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr3.txt new file mode 100644 index 0000000000000000000000000000000000000000..fe414ce3bd0bc11ad511fcf368ef004a64928cfd --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr3.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs73093420 24033 C T -0.4991126873802136 0.6177 +rs112360399 25204 C T -0.899474448199512 0.3684 +rs111734835 27141 A C -1.0487352190384773 0.2943 +rs9757283 28369 T C -0.23823349449446116 0.8117 +rs112891019 28918 C T -0.8742171648664835 0.382 +rs79443020 29016 G A -1.0528712593692602 0.2924 +rs17075464 31065 G A -1.274461242221922 0.2025 +rs17075475 32592 C A -0.7502568921077343 0.4531 +rs73093440 33355 G T 0.5953642753437558 0.5516 +rs73093442 33602 A C 0.6653916879149411 0.5058 +rs113390689 35760 C T -0.3828917886279368 0.7018 +rs147829840 36623 A G -0.3896437448597139 0.6968 +rs57615422 36662 G A 0.6575925235636497 0.5108 +rs141871303 37399 G A -0.4852486159581302 0.6275 +rs7430093 37497 A G -0.9199478730458622 0.3576 +rs112090131 43529 A G -1.1380490531341367 0.2551 +rs11922597 50465 C T -0.9846419014543693 0.3248 +rs73816907 54252 G A -0.2685188074671518 0.7883 +rs17080854 57747 C T -0.02381521960940949 0.981 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr4.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr4.txt new file mode 100644 index 0000000000000000000000000000000000000000..819839898de67ec1f348b19169e27ed75acf6b49 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr4.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs9999459 69019 A G 0.6251082708009197 0.5319 +rs7689091 73647 C T 0.4110989225556042 0.681 +rs6599369 73905 T C 0.426148007841278 0.67 +rs6599370 74101 A G 0.426148007841278 0.67 +rs10001277 74650 T G 0.426148007841278 0.67 +rs116711850 74699 A G -0.18924602067449273 0.8499 +rs28452624 76238 G A 0.3915374669012001 0.6954 +rs144268602 78774 C A 0.6328983888602066 0.5268 +rs55755847 86946 G A 0.13678593674927178 0.8912 +rs147369560 87878 A G -0.1003077561927799 0.9201 +rs138298877 89449 A G 0.36300653850713904 0.7166 +rs28868010 93172 G A 0.35672191193702163 0.7213 +rs74705444 96276 T C 0.1700128893322194 0.865 +rs7696955 101027 A G 0.19588522752777313 0.8447 +rs73793513 109779 C T 0.42559909479084457 0.6704 +rs75421884 111937 T C 0.46071930889032525 0.645 +rs28562543 113227 T C 0.5516327406597896 0.5812 +rs73793514 115315 T C 0.5614365109802021 0.5745 +rs116499764 115922 A G 0.5080760650905065 0.6114 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr5.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr5.txt new file mode 100644 index 0000000000000000000000000000000000000000..3f711c5d04c6b439b53a912bb4592e3cf3fc8c60 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr5.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs61194619 81853 G T -0.5973106430122742 0.5503 +rs78628132 81928 A G 0.07526986209982989 0.94 +rs139901098 97086 G A -0.3115270267304426 0.7554 +rs75072481 97656 T C -0.3185075085394764 0.7501 +rs115519963 104555 A C -0.5819505347448751 0.5606 +rs76971931 105881 T G -0.6019611472159031 0.5472 +rs111205984 110077 T C -1.119797652206396 0.2628 +rs114036206 113307 A G 1.4377676185224295 0.1505 +rs143295530 122294 G A 1.525638172551043 0.1271 +rs113973941 127174 C T -0.5395607369014453 0.5895 +rs114946231 130746 A G 1.347249159836196 0.1779 +rs73022532 131144 A G -1.1800005403477205 0.238 +rs139630792 139347 T C -0.5726229752752637 0.5669 +rs115781435 140149 G A -0.5127874636502121 0.6081 +rs116756667 146063 G A -0.5545536495194862 0.5792 +rs114247727 146466 T C -0.28636314404269225 0.7746 +rs56197951 147806 G A -1.102602095142033 0.2702 +rs114970380 149632 T G -0.2433942470828206 0.8077 +rs75860075 150378 T C -0.8654351416027507 0.3868 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr6.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr6.txt new file mode 100644 index 0000000000000000000000000000000000000000..2dc0cc43b8bdbba62798c22d6431457e51452ce1 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr6.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs79232348 208304 C A -0.022060117941149947 0.9824 +rs115879180 214532 T C 1.510954671884055 0.1308 +rs58565989 217020 T C -0.8123340107567895 0.4166 +rs73716623 217498 C T -1.322805703595717 0.1859 +rs6924095 219382 C A 0.8554537467691244 0.3923 +rs6916597 220909 A G -2.201650581986805 0.02769 +rs9501753 221146 A G -2.131840025201028 0.03302 +rs56227808 224181 G A -0.30600610170971154 0.7596 +rs73716626 224900 G A -0.30534947287310554 0.7601 +rs115774404 227361 G A -0.7296567894230502 0.4656 +rs73358071 227476 A G 1.5043160826142135 0.1325 +rs114198048 228002 T C -0.4825715271294068 0.6294 +rs9501765 228257 A G -2.0807150030409423 0.03746 +rs6928296 229975 A G -2.1763379477345137 0.02953 +rs184485383 231232 T C -0.7572501669440562 0.4489 +rs113422373 231464 A C 0.053542084671506646 0.9573 +rs9503022 231934 C T -1.240474338493388 0.2148 +rs9501770 232061 A G -1.3138401590605573 0.1889 +rs61363675 232264 A G 1.577415287941871 0.1147 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr7.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr7.txt new file mode 100644 index 0000000000000000000000000000000000000000..d3cb0752f5febb2a484980cd7e0f2079425ed2c2 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr7.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs75551652 41331 A G -1.3159226668637165 0.1882 +rs73260516 43523 T G -0.3938388764682464 0.6937 +rs116588193 46311 T G 0.33264800797631305 0.7394 +rs139582135 49802 G A -1.6763993304037903 0.09366 +rs57985374 52614 C A -2.171809961558633 0.02987 +rs78371858 54014 C A -1.9441281452103851 0.05188 +rs59663426 56062 C T -1.043536251933417 0.2967 +rs58975330 58031 A C 1.352861127405614 0.1761 +rs59745743 64225 A G -1.3064487403537393 0.1914 +rs60002145 65722 C T -0.9073911268751681 0.3642 +rs57522210 65724 C T -0.5222446523885382 0.6015 +rs73669506 67940 C A 0.02807792553819827 0.9776 +rs189935960 78526 T C -0.4472424700557182 0.6547 +rs141609973 79500 A G -0.6825361378792754 0.4949 +rs113483000 80391 T C -2.0346112946467447 0.04189 +rs138306395 80848 T C -2.0974925045427715 0.03595 +rs77933327 81501 A G 0.9062566966259077 0.3648 +rs11185554 81651 T C -1.92892639908366 0.05374 +rs76842904 81704 T C 0.9062566966259077 0.3648 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr8.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr8.txt new file mode 100644 index 0000000000000000000000000000000000000000..a60cd1d75328fee399ca1a56d1bd287b05a5c394 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr8.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs146807239 213476 A G 0.9390598825923929 0.3477 +rs6993172 215982 T C 0.405377564232785 0.6852 +rs140040645 216869 C T 0.846991247490428 0.397 +rs6983021 218012 C A 1.2849779197874818 0.1988 +rs111725148 218099 G A 0.6825361378792754 0.4949 +rs79793981 220598 T C 1.0925304817920511 0.2746 +rs55916701 221858 T C 1.4297109367680836 0.1528 +rs116785726 223190 C A -0.22664473991567557 0.8207 +rs138272050 224367 G T -0.33901291623067137 0.7346 +rs144432751 225153 A G -0.2202197704037523 0.8257 +rs115862822 226573 A C -0.2144450677679263 0.8302 +rs116566009 226891 T G -0.21816571131639026 0.8273 +rs116317051 227886 A G -0.21893587514450796 0.8267 +rs137895174 228326 G T -0.21893587514450796 0.8267 +rs183201205 233713 C T -0.2330790791178248 0.8157 +rs6980500 234308 A G -0.6672695073407978 0.5046 +rs190791820 235006 A G -0.22227475905476163 0.8241 +rs73668546 235245 C T 0.23900719965106973 0.8111 +rs192402078 235785 C T -0.22754497664114942 0.82 diff --git a/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr9.txt b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr9.txt new file mode 100644 index 0000000000000000000000000000000000000000..098b9eecb99cedd36cd55daacc389437e71f41ce --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-GLUCOSE_chr9.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs28757748 82870 A G 1.1817623770882646 0.2373 +rs113505127 204279 T C 0.06006985351515214 0.9521 +rs73370563 206459 T C 0.7322762047230995 0.464 +rs74761242 208880 C T -0.34313088122763247 0.7315 +rs73370593 212333 C T 1.0431042771107486 0.2969 +rs140428543 214005 T C 0.0032586225240239662 0.9974 +rs116104753 214593 C T 0.18631212444262207 0.8522 +rs115917982 215277 A G 0.7360504432300468 0.4617 +rs77005692 215329 A G -0.2084213339362423 0.8349 +rs75696963 216339 A G -2.936536275171106 0.003319 +rs76569213 218079 C T 0.5456595235916836 0.5853 +rs2039046 219855 A C -0.16632651590293387 0.8679 +rs114735866 220124 G T 0.4214863179459652 0.6734 +rs114653499 221300 C T -0.08872558352890518 0.9293 +rs114423361 221912 C T -0.18962882237487333 0.8496 +rs16907700 224462 C T -0.19064976293328267 0.8488 +rs7873617 224781 T G -2.680692472075716 0.007347 +rs7865047 225268 G A -2.2643922534629652 0.02355 +rs67698246 227087 T C 1.4346039092234248 0.1514 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr1.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr1.txt new file mode 100644 index 0000000000000000000000000000000000000000..b96c710fd6fe0d7410d41dfd578a929b4d38bc9f --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr1.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs146592146 860373 T C 1.1012221125919717 0.2708 +rs4245756 864083 T C 1.232935042848279 0.2176 +rs2341359 932949 A C -0.048773250254869005 0.9611 +rs74045071 993364 G T 0.6817453281021549 0.4954 +rs28580809 996075 A C 0.6749618551338951 0.4997 +rs3813192 1047193 T C 0.5917768905914466 0.554 +rs13129 1055459 T C -0.6085843204319833 0.5428 +rs60853205 1062896 C T 0.3083710606036522 0.7578 +rs4073175 1069566 A G -0.2015097581884119 0.8403 +rs116413370 1070770 A G -0.7210154646934921 0.4709 +rs72900494 1071101 A C 0.08545458407551303 0.9319 +rs72900497 1071133 A G 0.09010975171461957 0.9282 +rs56945342 1072814 T C -0.754081975116722 0.4508 +rs114845730 1073612 T C 0.10471746889621172 0.9166 +rs78919234 1075450 G A 0.03510000177270885 0.972 +rs112343466 1075479 A G 0.03510000177270885 0.972 +rs57133173 1080338 A G 0.24287788228759918 0.8081 +rs6604975 1081492 A G 0.1329916299893535 0.8942 +rs6604976 1081587 A G 0.018299407668827657 0.9854 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr10.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr10.txt new file mode 100644 index 0000000000000000000000000000000000000000..f993c8b024d735a2f7ad8b6731bf36d2f9d4b3be --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr10.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs76485537 85582 A G 0.4110989225556042 0.681 +rs184038273 85640 G A 0.370781878064956 0.7108 +rs112007070 87419 A G -0.20522031262174045 0.8374 +rs116091256 88234 A G 0.35899343565682423 0.7196 +rs9419554 89297 A G 0.7360504432300468 0.4617 +rs9419555 90196 A G -0.9994019821967766 0.3176 +rs141986392 98954 C A 1.0700428978063141 0.2846 +rs79349032 99341 C A 0.39451615826171027 0.6932 +rs9419558 102864 C T -0.4706369729105178 0.6379 +rs9419559 102866 C T -0.4706369729105178 0.6379 +rs112431531 107782 G T 0.2983972338845586 0.7654 +rs114622828 110302 C A 0.3090282992661456 0.7573 +rs9419476 111040 G A -1.5817791342138146 0.1137 +rs58113202 114085 T C -1.608617524078943 0.1077 +rs150425854 114445 G A 2.0116200899042105 0.04426 +rs9419417 115247 T C -0.052412517881857655 0.9582 +rs146984218 126748 A G 1.2136013272055397 0.2249 +rs116193599 128442 G A 1.2013898797037863 0.2296 +rs140464648 130980 A G 1.2953486023434508 0.1952 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr11.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr11.txt new file mode 100644 index 0000000000000000000000000000000000000000..944154b15df49beba53b264775e12941e54f1354 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr11.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs10400290 203892 A G -0.9563409647839468 0.3389 +rs73386645 205838 T C -1.0554928015264564 0.2912 +rs185553134 206984 A G 1.7568698250595052 0.07894 +rs183891668 209076 T C -1.391413741575076 0.1641 +rs74044911 212202 T C 0.370781878064956 0.7108 +rs73386658 218811 A G -1.0154318859380005 0.3099 +rs78217432 219983 T C 1.1404472915641473 0.2541 +rs13328840 220345 G A -1.0002283757327024 0.3172 +rs56407328 221807 C T -0.8758713062468312 0.3811 +rs116755906 222621 A G -0.599709283764995 0.5487 +rs114769259 222625 A G -1.1019118415635163 0.2705 +rs59986826 225823 A G -0.6976437722787971 0.4854 +rs144276621 227308 T C 1.0832443028802203 0.2787 +rs58643462 228910 A C -0.6879250196470331 0.4915 +rs150716073 229355 T G -1.1332721104489796 0.2571 +rs73394716 234839 A C -0.9644906377270133 0.3348 +rs116301602 235482 C A -1.1588925157040235 0.2465 +rs1056098 235619 C A -0.0702433138219167 0.944 +rs61109871 235737 G T -0.9597123617430375 0.3372 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr12.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr12.txt new file mode 100644 index 0000000000000000000000000000000000000000..fdacc12d0f6077590d999451ea8c54f3b6f2e9ae --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr12.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs112469599 79525 T C -0.08897723775041325 0.9291 +rs115367131 80881 A G -1.802988632199517 0.07139 +rs74570921 85685 A G -2.181046193249615 0.02918 +rs76981648 91812 A G -2.103294888461719 0.03544 +rs144323695 103000 T C -0.7421441543954095 0.458 +rs57212972 120335 T C -0.03760828766125594 0.97 +rs2368788 120519 T G -2.2555312986188167 0.0241 +rs60425136 126995 C T 1.51134725573528 0.1307 +rs12312097 127246 T C 0.8579863514255467 0.3909 +rs12313653 127668 T C 0.7565825483163406 0.4493 +rs12298934 127691 A G 0.7534159518148675 0.4512 +rs59356318 128298 G A 0.5983596246889081 0.5496 +rs4980846 142668 C T -1.3838643322428947 0.1664 +rs73603120 143399 A G 0.27072831183910195 0.7866 +rs7135530 148770 A C -0.24120014309344717 0.8094 +rs74055585 151573 C T 1.4091189443852614 0.1588 +rs3847945 153917 A C -0.2804920812285803 0.7791 +rs60745567 154696 T C 0.2479152246482995 0.8042 +rs7956300 155239 T G -0.2362998542853074 0.8132 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr13.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr13.txt new file mode 100644 index 0000000000000000000000000000000000000000..65335406249e868f14013f9be474412b91c6b7ec --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr13.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs9579861 18647069 T C -0.28766915909134116 0.7736 +rs9579904 18660291 C T -0.26241695809019266 0.793 +rs9579917 18666716 T C -0.25515938377390773 0.7986 +rs9578322 18687390 A G -0.4081003542098592 0.6832 +rs115509363 18688541 T G -0.15363187840201528 0.8779 +rs9578324 18690236 A G -0.20214930962340277 0.8398 +rs10454616 18692979 A G -0.30338037479257596 0.7616 +rs17841824 18701860 C T 0.03522541069135397 0.9719 +rs58910040 18702139 T C 0.032968133003024216 0.9737 +rs9578337 18703908 T C -0.014914991206209515 0.9881 +rs140803900 18710308 C T 0.3195625072145909 0.7493 +rs116805056 18716995 A G 0.2741101160351471 0.784 +rs145102868 18717150 T C 0.2672197117918153 0.7893 +rs11838759 18717765 G A 0.26955841028015787 0.7875 +rs182081154 18718164 A C 0.2718985840531979 0.7857 +rs184102133 18730042 T G 0.08067552698246289 0.9357 +rs139487659 18766808 G T -0.6978036438360338 0.4853 +rs143231601 18767863 C T -0.6134179805808924 0.5396 +rs141074623 18769648 A C -0.442261482441051 0.6583 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr14.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr14.txt new file mode 100644 index 0000000000000000000000000000000000000000..1c3bb05e75f8d3cd1d0f5116f3eb7debb200b148 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr14.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs77106479 19956806 T C -0.9142223928155393 0.3606 +rs1970435 19973007 T C 1.1299435776163553 0.2585 +rs73571304 19974162 G A -0.3237860740953455 0.7461 +rs57711077 19974407 C A -0.18529201588789967 0.853 +rs28685669 19974877 T C 0.641188839199864 0.5214 +rs79881678 19975490 G A -0.10408738725455392 0.9171 +rs115091581 19976937 T C 0.5640795423768693 0.5727 +rs7157946 19977399 T C -0.8464531482145013 0.3973 +rs7150745 19977686 T C 0.7464427549375229 0.4554 +rs28630531 19978098 A G 0.7411541169693973 0.4586 +rs74033739 19978190 T G -0.762938624313001 0.4455 +rs60953949 19980214 T C -0.6776399648779957 0.498 +rs1959609 19981797 A C -0.7048557662568312 0.4809 +rs58716355 19982567 C T -0.590135217114534 0.5551 +rs1959607 19984301 C T -0.9581244654218973 0.338 +rs28712501 19986000 G A 0.45723798314731906 0.6475 +rs2318559 19987730 A G 0.5259830268406174 0.5989 +rs7144309 19990148 G A 0.5626107063354613 0.5737 +rs58689871 19993090 A G -0.6691496826505976 0.5034 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr15.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr15.txt new file mode 100644 index 0000000000000000000000000000000000000000..492986ab3a7f9e682daea86704c4d199abfeeb63 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr15.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs138806630 19962406 T C 1.3138401590605573 0.1889 +rs112562494 23436530 A G -0.2827088911921881 0.7774 +rs112450607 23438207 T C -0.37682992552866984 0.7063 +rs28691768 23439271 T C -0.3832964110648655 0.7015 +rs140591462 23441534 C T 0.1851645158968335 0.8531 +rs112742309 23441583 T G -0.3412704387280334 0.7329 +rs113876688 23442829 A G 0.13109519777394424 0.8957 +rs56854950 23443190 A G 1.6563547451567098 0.09765 +rs11856020 23443197 T G -0.19601298830223435 0.8446 +rs113685354 23444089 T C -0.43288268460543644 0.6651 +rs111541638 23444317 A G -0.4158770143460763 0.6775 +rs143079147 23446014 C A -0.3961423738926984 0.692 +rs17118818 23446257 A G -0.47694680719273536 0.6334 +rs77168685 23446850 A G -0.4430908820962437 0.6577 +rs112047284 23448472 C T -0.3996694449238897 0.6894 +rs28555570 23449563 T C -0.4654628987621973 0.6416 +rs140135687 23454141 T C -0.10320534231708232 0.9178 +rs11852762 23456938 A C 0.6194802937147806 0.5356 +rs17118742 23459484 T C 1.0185850599347694 0.3084 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr16.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr16.txt new file mode 100644 index 0000000000000000000000000000000000000000..3c53b85711118ea8b07cf973b71fc01ff78e4446 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr16.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs2541687 34780 A G -0.04676565802222343 0.9627 +rs2562134 35187 T C -0.40225006532172536 0.6875 +rs148182028 37829 G A 0.8495056277842093 0.3956 +rs2541696 38165 A C 0.2560658380810453 0.7979 +rs798669 38553 A G -0.7413190727404791 0.4585 +rs150983641 39681 T C 1.0729356263366123 0.2833 +rs798671 40070 A G -0.6912634443279891 0.4894 +rs2562140 40599 C T -0.6820616008251557 0.4952 +rs149364779 41622 G A 1.073381458848099 0.2831 +rs60038985 41875 A C 0.101567471336545 0.9191 +rs60771648 41922 A G 0.11644483986882723 0.9073 +rs8053008 42976 C T 0.18439957908313231 0.8537 +rs216584 44048 G A -0.038235395489340476 0.9695 +rs146240039 44117 A G -1.0794212099383569 0.2804 +rs144123717 44126 A G -1.0769558280185707 0.2815 +rs57827257 44853 A G -1.6145877500323245 0.1064 +rs143769415 52581 T C -1.1845384125930336 0.2362 +rs111702021 52813 T G -1.4203699721341956 0.1555 +rs150040773 53854 T C -1.2579772056077834 0.2084 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr17.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr17.txt new file mode 100644 index 0000000000000000000000000000000000000000..66a6d73cdb2775cb6da89af188e20d3abb1a06b2 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr17.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs34845611 151604 T C 2.490955709773089 0.01274 +rs139915273 154787 C T 1.749874336104371 0.08014 +rs149792888 156491 A G 1.4772822275128297 0.1396 +rs111371606 158997 C T 1.2021639848511616 0.2293 +rs144418494 160286 A G -0.398040950801044 0.6906 +rs113247765 164887 C A 1.1574219755266244 0.2471 +rs144220793 165614 A G 0.22857404451261595 0.8192 +rs143331292 166060 T G 0.2326927491830447 0.816 +rs146581630 166076 C T 0.11581394295150703 0.9078 +rs141283065 166099 T C 0.2326927491830447 0.816 +rs112254317 168867 G A 1.0816681734013929 0.2794 +rs145416908 169378 C A -0.059190972422493125 0.9528 +rs150501844 170666 A C 1.126391129038793 0.26 +rs148525551 172517 T G -1.1176886311218297 0.2637 +rs78727535 177618 A G 0.7098454194804004 0.4778 +rs151226741 177735 A G 0.651381887083556 0.5148 +rs143155804 178043 C T 0.6129642173724877 0.5399 +rs144218289 178273 A G 0.6067753635142648 0.544 +rs148804384 178301 G A 0.6067753635142648 0.544 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr18.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr18.txt new file mode 100644 index 0000000000000000000000000000000000000000..49ebb59b3c46fcb42685c3d3131bf840b51635b1 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr18.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs147750431 125380 T C 1.0855005956966473 0.2777 +rs114380142 140670 T C 1.8993383776595678 0.05752 +rs113995585 169252 A G 0.6267852704667092 0.5308 +rs3859369 180069 G T 0.584773537401786 0.5587 +rs28463286 185127 C T -0.24972503026460668 0.8028 +rs141844059 189606 T C 1.6520713824164532 0.09852 +rs116443871 190651 A G 0.3265609274123725 0.744 +rs115907518 190653 T C 0.4041532897438071 0.6861 +rs149038606 194853 T C 0.41724392436156055 0.6765 +rs147838874 203758 T C 0.3830266558052307 0.7017 +rs115911406 204518 C T 0.3864006078737528 0.6992 +rs115627554 207573 A G 0.3904551685283391 0.6962 +rs111488741 214930 C T 0.38100437793654307 0.7032 +rs114579562 221175 C T 0.36394376859778177 0.7159 +rs192680454 222229 G A 0.3050868582132566 0.7603 +rs147770653 242201 T G 0.08834811272693274 0.9296 +rs114978329 243219 C T 0.11139894074138847 0.9113 +rs115159155 244768 T C 0.11139894074138847 0.9113 +rs115850020 246677 G A 0.10761638389871508 0.9143 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr19.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr19.txt new file mode 100644 index 0000000000000000000000000000000000000000..ce12c01654da484f7a896537f9c4f33cbb4bebae --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr19.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs112945990 285325 A G 0.0496516331975725 0.9604 +rs73496485 287225 G A 0.1787933080747277 0.8581 +rs111230410 287786 T C 0.1835072891180667 0.8544 +rs55822606 298597 T G -2.656186048682359 0.007903 +rs11880251 301982 G A -1.468383798245644 0.142 +rs73916873 304475 A G -1.4969740901069248 0.1344 +rs73916875 304667 A G -1.4817756508632614 0.1384 +rs112357940 306329 A G -1.7405641856876928 0.08176 +rs35042658 307282 C T -1.7620550314782262 0.07806 +rs59415447 308681 A G -1.422779796186088 0.1548 +rs7253289 314107 T C 0.90060194518266 0.3678 +rs73916878 314542 T C -1.6773707777762004 0.09347 +rs141796926 318914 A G -1.3967126453904375 0.1625 +rs114812045 319373 C A -1.2632481879212534 0.2065 +rs10414947 322451 A G 1.2313285714939919 0.2182 +rs10415364 322645 A G 2.056026105259428 0.03978 +rs73916891 324920 C T -1.2096844472599757 0.2264 +rs116371303 326179 A G -1.4125094845595063 0.1578 +rs7251819 326250 T C 2.0120942755920153 0.04421 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr2.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr2.txt new file mode 100644 index 0000000000000000000000000000000000000000..07b26cbff21f23b6883227e66df6978ee320a62e --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr2.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs143146982 13181 T C -0.679691214548953 0.4967 +rs112859695 13366 G T -1.7378343849248736 0.08224 +rs112217841 14898 C A -1.7381749022397641 0.08218 +rs112288223 15937 G A 0.9375027691704452 0.3485 +rs114844818 16187 T C 0.9952802101965204 0.3196 +rs116605203 16493 A G 0.9952802101965204 0.3196 +rs112063427 20329 T C -0.09703323658552215 0.9227 +rs7559233 22215 G A 0.5162210928493822 0.6057 +rs79450304 24363 G A 0.2820567445191436 0.7779 +rs115471281 25192 T C 1.098010280917678 0.2722 +rs76263041 25213 G T 0.26371439822153003 0.792 +rs115709817 27332 T C 1.3270262483156572 0.1845 +rs116170552 27499 A G -0.5920755479762463 0.5538 +rs116577140 27641 G A 1.3987098808575746 0.1619 +rs56921550 28258 G T -0.007018616792533273 0.9944 +rs116760537 31658 C A -2.313594056889407 0.02069 +rs75087018 32946 T C -1.6781388295869375 0.09332 +rs78328985 33433 A C 1.8991861888019477 0.05754 +rs79720199 34831 C A -1.3386028433542072 0.1807 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr20.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr20.txt new file mode 100644 index 0000000000000000000000000000000000000000..764ead4265db85b0007b679c6ffd538d0cb06926 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr20.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs75670495 83092 T C -2.1135935175532796 0.03455 +rs76107804 87000 T C -0.5859635644188915 0.5579 +rs60878529 87623 C T -2.599021197307923 0.009349 +rs6040382 90438 T C -1.371240489991503 0.1703 +rs6040395 90452 A G -1.3120596765932442 0.1895 +rs143912933 111439 C T -1.0682671989961936 0.2854 +rs116171563 112686 C T -1.1035232512521758 0.2698 +rs75428117 116730 A G -0.12983117193289204 0.8967 +rs76760245 117806 G T 0.17281098776686984 0.8628 +rs80150033 118100 T C -1.0776275553616843 0.2812 +rs115482354 121800 C T -1.3904245363529626 0.1644 +rs57572545 130234 T C -1.0129165972132643 0.3111 +rs74957717 137581 G A -1.009990169249576 0.3125 +rs75836080 137894 A G -1.007072365356948 0.3139 +rs79131632 141870 C T -0.9862712987022325 0.324 +rs117815495 148434 T C 1.7397666540015453 0.0819 +rs4815966 148972 G A -0.5516327406597896 0.5812 +rs1592156 150854 T C 0.37508130529528705 0.7076 +rs150240597 151766 A G 0.8643420807350636 0.3874 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr21.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr21.txt new file mode 100644 index 0000000000000000000000000000000000000000..2eb032ce5af39c83c4b3f54562bb0060fcf334a3 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr21.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs7280495 13301529 C T -0.920330644026167 0.3574 +rs11909716 13339462 G A -0.3976339923232816 0.6909 +rs149727072 13380809 T C -2.041008321198465 0.04125 +rs115847200 13385851 A G 0.15997597452811885 0.8729 +rs73891602 13406181 C T 0.5436243499755583 0.5867 +rs73893703 13407959 T C 0.37844505971470094 0.7051 +rs147649438 13419455 A G 0.6273955255827874 0.5304 +rs141175223 13422468 A G 0.6489046638504292 0.5164 +rs140161332 13428113 A C 0.7203654770935916 0.4713 +rs41319746 13430670 T G 0.7885073517975458 0.4304 +rs77390769 13467857 G T -0.9176540713807522 0.3588 +rs146784683 13468187 C T -0.7794749298958306 0.4357 +rs60113755 13476210 G A -1.05003939654984 0.2937 +rs114033059 13571250 C T 0.3886974080057044 0.6975 +rs1297078 13998294 T C 1.1774899662869165 0.239 +rs139639182 14002903 A G 1.223873372289454 0.221 +rs79073717 14077602 G A -1.0487352190384773 0.2943 +rs141871761 14081105 A C -1.1183910854490897 0.2634 +rs114322999 14083322 A G 0.622519995335365 0.5336 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr22.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr22.txt new file mode 100644 index 0000000000000000000000000000000000000000..ac19cd68eadaa7abb2d6b1a3dcac8ec9b711b0e7 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr22.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs5993852 16397441 A C 0.18006696089014543 0.8571 +rs149164473 16399076 T C 0.12351411212123878 0.9017 +rs143312029 16399329 C T 0.46504392671604694 0.6419 +rs140131425 16407798 T G 0.2943375264825132 0.7685 +rs140986779 16410211 G A 0.3115270267304426 0.7554 +rs9617916 16413593 G A 0.6261752486833279 0.5312 +rs9618904 16415438 T C 0.6025621595511804 0.5468 +rs7293182 16416156 A G 0.5855172071277528 0.5582 +rs4010560 16416625 G A 0.35578711403487523 0.722 +rs144010528 16417607 A G 0.5301614450555193 0.596 +rs116324977 16417683 T C 0.5673152763560437 0.5705 +rs138939385 16424153 A G 0.6338173943889464 0.5262 +rs147384828 16427482 T C 0.294075777097879 0.7687 +rs7290329 16449033 T C -0.31192174010946094 0.7551 +rs151202789 16449870 A G -0.31192174010946094 0.7551 +rs193197752 16453681 G A -0.16175346486535333 0.8715 +rs7290826 16575950 C T 2.9436181252573514 0.003244 +rs59436548 16580003 G A 2.6579395221982263 0.007862 +rs9617829 16658540 C T 2.1628853347261963 0.03055 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr3.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr3.txt new file mode 100644 index 0000000000000000000000000000000000000000..46916b274f685a887fba2a0062a488ee78ead602 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr3.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs73093420 24033 C T 0.3439285770650309 0.7309 +rs112360399 25204 C T 0.26592106693340795 0.7903 +rs111734835 27141 A C 0.468817626006891 0.6392 +rs9757283 28369 T C -0.04751848258690071 0.9621 +rs112891019 28918 C T 0.9077695298680555 0.364 +rs79443020 29016 G A 0.8605244712757347 0.3895 +rs17075464 31065 G A 0.7148528084165299 0.4747 +rs17075475 32592 C A 0.9805797993530287 0.3268 +rs73093440 33355 G T -0.15908741921433422 0.8736 +rs73093442 33602 A C -0.17802925571219538 0.8587 +rs113390689 35760 C T 1.0483008894034902 0.2945 +rs147829840 36623 A G 1.06251930227086 0.288 +rs57615422 36662 G A -0.15147630629255318 0.8796 +rs141871303 37399 G A 1.1561984345725298 0.2476 +rs7430093 37497 A G 1.098010280917678 0.2722 +rs112090131 43529 A G -0.45195694462415703 0.6513 +rs11922597 50465 C T -1.8281969407281589 0.06752 +rs73816907 54252 G A -0.6085843204319833 0.5428 +rs17080854 57747 C T -0.058061049528962516 0.9537 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr4.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr4.txt new file mode 100644 index 0000000000000000000000000000000000000000..694d092ebb102a80fce5709e79f79d2bfeaff37d --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr4.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs9999459 69019 A G 0.6920594427799636 0.4889 +rs7689091 73647 C T 0.7647842969003831 0.4444 +rs6599369 73905 T C 0.9716996318419693 0.3312 +rs6599370 74101 A G 0.9690905745590217 0.3325 +rs10001277 74650 T G 0.9690905745590217 0.3325 +rs116711850 74699 A G -0.9441363031758979 0.3451 +rs28452624 76238 G A 1.0029188849738444 0.3159 +rs55755847 86946 G A 0.6066247067740369 0.5441 +rs147369560 87878 A G -0.9648898216774427 0.3346 +rs138298877 89449 A G 0.8142530501940454 0.4155 +rs28868010 93172 G A 0.8142530501940454 0.4155 +rs74705444 96276 T C 0.6076795934074356 0.5434 +rs7696955 101027 A G 0.6342770979217236 0.5259 +rs73793513 109779 C T 0.7326039848266286 0.4638 +rs28562543 113227 T C 1.2784239041315173 0.2011 +rs73793514 115315 T C 0.7888494560537967 0.4302 +rs116499764 115922 A G 1.2326670766722896 0.2177 +rs77840214 118316 A G 0.7862859189246132 0.4317 +rs28796931 120178 G A 1.2151733040378303 0.2243 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr5.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr5.txt new file mode 100644 index 0000000000000000000000000000000000000000..81d77d74f333687fcbed33baadd14cf58c545808 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr5.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs112520380 81247 T G -0.5083612825291294 0.6112 +rs61194619 81853 G T -0.36434553647304185 0.7156 +rs78628132 81928 A G 0.815825406527354 0.4146 +rs111333430 86652 T C 0.7577511024877744 0.4486 +rs80098533 88648 G A -1.350673639581089 0.1768 +rs75282059 92662 A G 0.10068565393169761 0.9198 +rs139901098 97086 G A -0.5001066271622767 0.617 +rs75072481 97656 T C -0.4964173309042863 0.6196 +rs115519963 104555 A C -0.6549499171006861 0.5125 +rs76971931 105881 T G -0.6108483214068275 0.5413 +rs111205984 110077 T C 0.5056533818345377 0.6131 +rs114036206 113307 A G -0.08092700941699398 0.9355 +rs143295530 122294 G A -0.08168148749427599 0.9349 +rs113973941 127174 C T 0.8405501419786958 0.4006 +rs114946231 130746 A G -0.37494684360642444 0.7077 +rs73022532 131144 A G -1.6955032196422162 0.08998 +rs115781435 140149 G A 0.6027124466412679 0.5467 +rs116756667 146063 G A -0.25308827395236483 0.8002 +rs114247727 146466 T C -0.12048368876042367 0.9041 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr6.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr6.txt new file mode 100644 index 0000000000000000000000000000000000000000..ab370b23658a78e01ea4252f5f27dc8ac06c770f --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr6.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs73716605 202648 C T -1.1404472915641473 0.2541 +rs115879180 214532 T C -0.31415936947469403 0.7534 +rs58565989 217020 T C -0.6063234345903797 0.5443 +rs73716623 217498 C T -0.7342440677533051 0.4628 +rs6924095 219382 C A 1.4111513215099236 0.1582 +rs6916597 220909 A G -0.8457360635272954 0.3977 +rs9501753 221146 A G -0.6890369743690903 0.4908 +rs56227808 224181 G A 1.407429732025457 0.1593 +rs73716626 224900 G A 1.8476706661254494 0.06465 +rs115774404 227361 G A -1.3020479341264286 0.1929 +rs73358071 227476 A G 1.1223821280833153 0.2617 +rs114198048 228002 T C -0.9723026618396381 0.3309 +rs9501765 228257 A G -1.3120596765932442 0.1895 +rs6928296 229975 A G -0.9779480874073082 0.3281 +rs184485383 231232 T C -0.8538285374690108 0.3932 +rs113422373 231464 A C -1.2959288462604162 0.195 +rs9503022 231934 C T -0.8412640958093335 0.4002 +rs9501770 232061 A G -0.546386918945845 0.5848 +rs61363675 232264 A G 2.0099167561167595 0.04444 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr7.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr7.txt new file mode 100644 index 0000000000000000000000000000000000000000..927b1bea7e0444124ffdc976efa1ae6aca6e9e28 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr7.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs75551652 41331 A G -0.22587325463073188 0.8213 +rs73260516 43523 T G -1.374456519348723 0.1693 +rs116588193 46311 T G 0.1667077592249483 0.8676 +rs139582135 49802 G A 0.6296860673276593 0.5289 +rs57985374 52614 C A -0.2838830584675149 0.7765 +rs78371858 54014 C A 0.5904335847966656 0.5549 +rs59663426 56062 C T 0.7312933360613111 0.4646 +rs58975330 58031 A C 0.7121046096795448 0.4764 +rs116446936 61386 T C -0.3350332557610817 0.7376 +rs59745743 64225 A G -0.47161726649254676 0.6372 +rs60002145 65722 C T 0.9147935910174844 0.3603 +rs57522210 65724 C T -0.22458774427055636 0.8223 +rs116408760 65945 A G -0.24145821251069585 0.8092 +rs73669506 67940 C A 0.23436709719023927 0.8147 +rs189935960 78526 T C 0.24107111440960463 0.8095 +rs141609973 79500 A G -0.06333468067801974 0.9495 +rs113483000 80391 T C 0.40061988925917685 0.6887 +rs138306395 80848 T C -0.7592550515186705 0.4477 +rs77933327 81501 A G 1.1717436312591416 0.2413 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr8.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr8.txt new file mode 100644 index 0000000000000000000000000000000000000000..52199d1ed6c2e3109b45b7f61058ff8f1ab230d9 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr8.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs146807239 213476 A G 1.551007026901105 0.1209 +rs144306319 215547 T C -0.9178450370483322 0.3587 +rs6993172 215982 T C 0.7337518356654666 0.4631 +rs140040645 216869 C T 1.017112320270488 0.3091 +rs6983021 218012 C A 0.3753502490215038 0.7074 +rs111725148 218099 G A 0.6465858783465507 0.5179 +rs114652438 219133 C T -0.8817722148298102 0.3779 +rs79793981 220598 T C 0.13653292229422978 0.8914 +rs55916701 221858 T C 0.1343826506102885 0.8931 +rs116785726 223190 C A -0.8771595193402013 0.3804 +rs138272050 224367 G T 0.5275668593175623 0.5978 +rs144432751 225153 A G -0.8742171648664835 0.382 +rs115862822 226573 A C -0.8791868006132906 0.3793 +rs116566009 226891 T G -0.8869608105094826 0.3751 +rs116095585 227771 T G -1.4996696346302465 0.1337 +rs116317051 227886 A G -0.8839929844179006 0.3767 +rs137895174 228326 G T -0.8812177016857401 0.3782 +rs183201205 233713 C T -0.9144127590665815 0.3605 +rs6980500 234308 A G 1.2549414925004096 0.2095 diff --git a/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr9.txt b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr9.txt new file mode 100644 index 0000000000000000000000000000000000000000..10e7cf12bdb29aae36fb36bfb93c626e6271cb24 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_FAST-INSULIN_chr9.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs2998935 50568 C A 1.8320766610097559 0.06694 +rs28757748 82870 A G 2.275432460025794 0.02288 +rs7872275 141836 A G -0.4985449431585581 0.6181 +rs149055759 169154 C T -0.4038813110555357 0.6863 +rs147090847 170520 A G -0.4038813110555357 0.6863 +rs139575870 172365 C T -0.4139646442463398 0.6789 +rs142581442 174500 T G 3.862353303539017 0.0001123 +rs141283707 185919 G A -0.44668848097418073 0.6551 +rs148361463 190367 C T 3.021892186797012 0.002512 +rs185694740 191004 C T 3.4636496918676225 0.0005329 +rs146433614 192091 C A 3.3975989435851086 0.0006798 +rs113505127 204279 T C 1.5373811486018716 0.1242 +rs73370563 206459 T C -0.4381190301693338 0.6613 +rs74761242 208880 C T 2.2568091940370407 0.02402 +rs73370593 212333 C T -0.7764217611479276 0.4375 +rs140428543 214005 T C 1.1316062768807618 0.2578 +rs116104753 214593 C T 1.5300675881378298 0.126 +rs115917982 215277 A G 1.2337394730550935 0.2173 +rs77005692 215329 A G -1.041809518968513 0.2975 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr1.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr1.txt new file mode 100644 index 0000000000000000000000000000000000000000..a1726b35cd9e40377e6fc41941ef9ff3c0675337 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr1.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs74045212 822311 C T 0.40592188121161676 0.6848 +rs7554265 823390 A C 0.41792767166948175 0.676 +rs114066716 832433 A G 0.5157915570468276 0.606 +rs6700874 836648 A G 1.0509098413617262 0.2933 +rs141993323 848377 C A 0.08344211792322333 0.9335 +rs114777415 849760 C A 0.07577261944530012 0.9396 +rs115636977 850123 A G 0.12288268129946602 0.9022 +rs74045280 854669 A G 0.44876664867160626 0.6536 +rs147035796 855001 A G 0.8947887973064693 0.3709 +rs2905036 857100 C T -0.24455630541573684 0.8068 +rs11805266 858951 T C -0.3609992603449265 0.7181 +rs146592146 860373 T C -0.46853786431618816 0.6394 +rs4245756 864083 T C -1.1394872097014141 0.2545 +rs116301497 886892 A G -0.14970165803543053 0.881 +rs116091741 887001 T C 0.37172178952696233 0.7101 +rs145315181 887710 G A -0.14970165803543053 0.881 +rs141372940 889154 C T -0.14970165803543053 0.881 +rs141671843 890382 A G -0.14970165803543053 0.881 +rs6703274 891881 A G 0.429444191101221 0.6676 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr10.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr10.txt new file mode 100644 index 0000000000000000000000000000000000000000..3a6aea5082fcd56e064fee0c3f632bbea6219092 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr10.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs9419458 71558 C T 0.11329081364694267 0.9098 +rs145393001 73767 T C 0.981999691895244 0.3261 +rs6560851 85397 A G 1.1228528388038415 0.2615 +rs76485537 85582 A G -0.2769740917062299 0.7818 +rs184038273 85640 G A -0.48116392214425646 0.6304 +rs112007070 87419 A G 0.42971908327165625 0.6674 +rs116091256 88234 A G -0.48116392214425646 0.6304 +rs9419554 89297 A G 0.5503198670491432 0.5821 +rs9419555 90196 A G -0.5724753218505095 0.567 +rs141986392 98954 C A -0.009901343464758848 0.9921 +rs79349032 99341 C A -0.354051884585275 0.7233 +rs9419558 102864 C T -0.13805114071318347 0.8902 +rs9419559 102866 C T -0.14007592765818944 0.8886 +rs112431531 107782 G T -0.3158715592104311 0.7521 +rs114622828 110302 C A -0.31508120303026754 0.7527 +rs9419476 111040 G A -0.7252478377679412 0.4683 +rs58113202 114085 T C -0.6571258479578639 0.5111 +rs150425854 114445 G A -0.6760640188917229 0.499 +rs9419417 115247 T C -0.09690731452396961 0.9228 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr11.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr11.txt new file mode 100644 index 0000000000000000000000000000000000000000..73e576ab0cf634016d2564cf62ce802e3dfaedb3 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr11.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs185553134 206984 A G -0.005514610154793437 0.9956 +rs183891668 209076 T C 0.7574171243397958 0.4488 +rs74044911 212202 T C -0.38950853253437523 0.6969 +rs73386658 218811 A G 1.0649468109779516 0.2869 +rs78217432 219983 T C 1.3099876900511545 0.1902 +rs13328840 220345 G A 1.1692572535894348 0.2423 +rs56407328 221807 C T 0.5754307686077733 0.565 +rs116755906 222621 A G 0.8111143600565939 0.4173 +rs114769259 222625 A G 1.1247381745747105 0.2607 +rs59986826 225823 A G 1.3809315763389496 0.1673 +rs144276621 227308 T C 1.2510945053232938 0.2109 +rs111352645 228728 C T -1.402386039225694 0.1608 +rs58643462 228910 A C 1.3809315763389496 0.1673 +rs73394716 234839 A C 1.183527889758155 0.2366 +rs1056098 235619 C A 0.030084076620189113 0.976 +rs61109871 235737 G T 1.187830996075472 0.2349 +rs73394724 237248 T C 1.1855501464769773 0.2358 +rs74044924 238313 T C 1.4996696346302465 0.1337 +rs73394732 240022 G T 1.1855501464769773 0.2358 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr12.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr12.txt new file mode 100644 index 0000000000000000000000000000000000000000..dea3998cec366143816fd6ad042f73bed5b1f643 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr12.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs12315108 61337 C T 0.7669689109695275 0.4431 +rs115172304 69963 A G 0.320749806087053 0.7484 +rs112469599 79525 T C 0.5458049795551849 0.5852 +rs115367131 80881 A G 1.1380490531341367 0.2551 +rs74570921 85685 A G 0.6557266787982535 0.512 +rs75740863 87224 A G 2.4815836658403008 0.01308 +rs12099819 92738 T C 2.325598119484846 0.02004 +rs144323695 103000 T C 0.7706743149271796 0.4409 +rs146184188 115661 G T 1.9732244150714648 0.04847 +rs114015574 119605 G A 1.9254746851510012 0.05417 +rs57212972 120335 T C 1.009364202135286 0.3128 +rs2368788 120519 T G -1.0104077006128618 0.3123 +rs143455948 122459 C T 0.8904952831957267 0.3732 +rs140359465 123104 T C 1.843884324829605 0.0652 +rs150089915 123308 A G 1.8414885294168917 0.06555 +rs60425136 126995 C T 0.13893691487134704 0.8895 +rs12312097 127246 T C 0.8531069457458028 0.3936 +rs12313653 127668 T C 0.6267852704667092 0.5308 +rs12298934 127691 A G 0.5509032491951418 0.5817 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr13.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr13.txt new file mode 100644 index 0000000000000000000000000000000000000000..5bcd524825cb9aee6fc36ddeca54375ca50ecd3d --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr13.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs187797184 18628648 A G 0.07187674119716864 0.9427 +rs182787589 18629172 T C 0.06810757548120763 0.9457 +rs6490543 18630556 G A 0.30298669653863874 0.7619 +rs7322581 18633033 G A 0.5968612806273383 0.5506 +rs57959793 18633283 T C 0.5539690899198421 0.5796 +rs145869721 18636866 A G 0.4469654583680185 0.6549 +rs142108174 18638443 T G 0.5602630891872941 0.5753 +rs181769409 18641865 A G -1.726486088106306 0.08426 +rs9579861 18647069 T C -2.365412470271718 0.01801 +rs9579904 18660291 C T -2.4005601525645397 0.01637 +rs4113411 18664032 G A -0.7575841028510356 0.4487 +rs9579917 18666716 T C -2.442894396245856 0.01457 +rs141486222 18679483 C T -2.7530105128739355 0.005905 +rs17051788 18682491 C T -2.65952897092659 0.007825 +rs9578322 18687390 A G -2.767604143780415 0.005647 +rs115509363 18688541 T G -2.4892858647872385 0.0128 +rs9578324 18690236 A G -2.035605351451388 0.04179 +rs9578325 18690291 A G -2.202358427733059 0.02764 +rs114812413 18690521 G T -1.0293824345554234 0.3033 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr14.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr14.txt new file mode 100644 index 0000000000000000000000000000000000000000..8eb29e75b95d5ee0f2f4c0c3f552680f4e7b72e3 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr14.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs7156294 19853191 C T -0.31192174010946094 0.7551 +rs75165453 19882529 A G 1.8200591344181212 0.06875 +rs74036122 19883625 G A 1.5879395901947118 0.1123 +rs8019190 19884418 G A 1.6590783761369816 0.0971 +rs8008955 19884947 C T 1.4669119842025322 0.1424 +rs74036123 19886148 C T 1.7117106770359132 0.08695 +rs7158472 19893506 G A 1.7224391324526145 0.08499 +rs59464905 19896747 A G 2.0673625959247444 0.0387 +rs10467723 19898743 A G 0.37911832353027364 0.7046 +rs76258876 19900288 C T 3.7537623913302554 0.0001742 +rs76463931 19903587 G A 3.58583605972069 0.000336 +rs10140001 19904860 G T 3.2096428302042757 0.001329 +rs10143827 19907041 C A 2.7798739627658806 0.005438 +rs56013841 19907541 A G 1.9869313946257825 0.04693 +rs74033405 19908987 A G 1.4111513215099236 0.1582 +rs74033406 19909152 G A 2.5045709883596547 0.01226 +rs7160479 19924031 C T -0.924165797737739 0.3554 +rs113290635 19939984 T C 0.6141745334282411 0.5391 +rs77106479 19956806 T C -0.9917899524402435 0.3213 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr15.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr15.txt new file mode 100644 index 0000000000000000000000000000000000000000..089bc76240e22a44328344d69196cadc7cc671a9 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr15.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs9745162 19896175 C T 0.8561767876698314 0.3919 +rs139080836 19923127 T G -1.7650224067191462 0.07756 +rs28406715 19924569 C T -1.7875415676069035 0.07385 +rs28625205 19926305 A C -1.765915657193339 0.07741 +rs28687410 19926677 A G -1.7409063241510745 0.0817 +rs28853049 19950231 A C -1.393065449090797 0.1636 +rs59364040 19952950 G A 0.3915374669012001 0.6954 +rs11248700 19956943 G T -1.4709671536245748 0.1413 +rs138806630 19962406 T C 0.1279355214042283 0.8982 +rs1826162 19965013 C T -1.5121331229861796 0.1305 +rs28549845 19967067 C T -1.5968461762071278 0.1103 +rs116799926 19976138 C T -1.5129199252226782 0.1303 +rs28576630 19977986 C T -1.4585100755353044 0.1447 +rs28807479 19980018 T G -1.5129199252226782 0.1303 +rs28769060 19981614 T G -1.5129199252226782 0.1303 +rs114411149 19990595 T C -1.4091189443852614 0.1588 +rs17134427 20988783 G A -0.6621111352080153 0.5079 +rs115880717 23407203 C T 0.899474448199512 0.3684 +rs112562494 23436530 A G 0.7823651648553871 0.434 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr16.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr16.txt new file mode 100644 index 0000000000000000000000000000000000000000..822567187fc0a492ae3a11225926da33144e6991 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr16.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs2541695 36756 A G -0.9406192761969323 0.3469 +rs148182028 37829 G A 0.9146031584610813 0.3604 +rs798668 38087 G A -0.9398392937177551 0.3473 +rs2541696 38165 A C 0.2896291028296319 0.7721 +rs798669 38553 A G -1.205267634125001 0.2281 +rs798670 39526 T C -1.5968461762071278 0.1103 +rs150983641 39681 T C 0.8074626235102949 0.4194 +rs798671 40070 A G -1.182518574047108 0.237 +rs2562140 40599 C T -1.1815104615536267 0.2374 +rs149364779 41622 G A 0.7873107128464281 0.4311 +rs60038985 41875 A C 0.19665184021292495 0.8441 +rs60771648 41922 A G 0.14742065918693903 0.8828 +rs114459681 42888 A G -0.828124492579557 0.4076 +rs8053008 42976 C T 0.21470156800174459 0.83 +rs216584 44048 G A -0.044005524777219515 0.9649 +rs146240039 44117 A G 0.0 1.0 +rs144123717 44126 A G 0.002882626508035225 0.9977 +rs57827257 44853 A G 0.595513915790884 0.5515 +rs143769415 52581 T C 0.49018923171520934 0.624 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr17.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr17.txt new file mode 100644 index 0000000000000000000000000000000000000000..55d0490aeddf4c5a33336906cbc0a2a0d2da04d0 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr17.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs111371606 158997 C T 0.7574171243397958 0.4488 +rs144418494 160286 A G 0.047643955954476534 0.962 +rs113247765 164887 C A 0.7617654575237708 0.4462 +rs144220793 165614 A G 0.9723026618396381 0.3309 +rs143331292 166060 T G 0.9779480874073082 0.3281 +rs141283065 166099 T C 0.9787571229182337 0.3277 +rs112254317 168867 G A 0.6387278374848109 0.523 +rs145416908 169378 C A 0.7353933018111011 0.4621 +rs7342846 169888 C T 0.7713491615622162 0.4405 +rs150501844 170666 A C 0.5844761600644469 0.5589 +rs9675238 172402 T C 0.6153857498363893 0.5383 +rs148525551 172517 T G 0.3465891477261 0.7289 +rs140239298 174412 A C 0.6419586986116425 0.5209 +rs78727535 177618 A G 0.40728320041242083 0.6838 +rs151226741 177735 A G -0.5095025662426634 0.6104 +rs143155804 178043 C T -0.3787143446390125 0.7049 +rs144218289 178273 A G -0.3777719673986046 0.7056 +rs148804384 178301 G A -0.3777719673986046 0.7056 +rs112537445 178436 G A 0.5460959261333558 0.585 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr18.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr18.txt new file mode 100644 index 0000000000000000000000000000000000000000..bad91f3a9922d719544f7a0c1e2c8a34f907320a --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr18.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs145958786 53507 C T -1.429362746414218 0.1529 +rs149624564 54567 C A -1.4286668851064714 0.1531 +rs187721194 56807 C A -1.4159163408265567 0.1568 +rs146080708 60087 C T -1.4231247319149192 0.1547 +rs144543234 62785 C T -1.4210576514143014 0.1553 +rs114901461 65013 C T -1.419682963895703 0.1557 +rs149861658 66031 T C -1.4183109540217433 0.1561 +rs150916233 66866 T C -1.4176259491404093 0.1563 +rs137941594 92553 A G 0.5110729160438144 0.6093 +rs186099998 120259 A G 1.4946722498066165 0.135 +rs147750431 125380 T C 0.3322506509800695 0.7397 +rs112519314 136750 G A -0.31666211275313993 0.7515 +rs114380142 140670 T C 0.22690193163457414 0.8205 +rs79095791 149701 G A 1.3315746488528335 0.183 +rs113995585 169252 A G -0.04325282022959635 0.9655 +rs3859369 180069 G T -0.6090368707709692 0.5425 +rs28463286 185127 C T 1.0603178967076008 0.289 +rs141844059 189606 T C -0.8616139352712704 0.3889 +rs116443871 190651 A G 0.024692797616383554 0.9803 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr19.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr19.txt new file mode 100644 index 0000000000000000000000000000000000000000..7d6283e69a2816296e57bb8135c82477cf6c2c26 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr19.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs149853656 250596 T C -0.5063656270644092 0.6126 +rs139675149 252951 A G -0.14818090632882366 0.8822 +rs77991369 267355 T C 0.5971608421532795 0.5504 +rs141972423 277245 T C 0.2568429663830504 0.7973 +rs112945990 285325 A G -0.5849222454636005 0.5586 +rs73496485 287225 G A -0.45556891570003455 0.6487 +rs111230410 287786 T C -0.3297352715882947 0.7416 +rs58470729 297617 A G 0.10433941493847175 0.9169 +rs79515385 297919 G A 1.2693956132014932 0.2043 +rs55822606 298597 T G -0.7368723172691775 0.4612 +rs11880251 301982 G A 0.05956763010985834 0.9525 +rs73916873 304475 A G 0.0 1.0 +rs73916875 304667 A G 0.0018799723133690034 0.9985 +rs112357940 306329 A G 0.099426050411585 0.9208 +rs35042658 307282 C T 0.2257446868315972 0.8214 +rs59415447 308681 A G -0.3345030364232122 0.738 +rs7253289 314107 T C -0.18554702490891956 0.8528 +rs73916878 314542 T C 0.36541720526289057 0.7148 +rs141796926 318914 A G 0.5940181104997608 0.5525 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr2.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr2.txt new file mode 100644 index 0000000000000000000000000000000000000000..27ffc1f70c2494ff1cd2568680ed5c6b6c564b73 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr2.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs112288223 15937 G A 0.2991835499893129 0.7648 +rs114844818 16187 T C 0.3889677544084658 0.6973 +rs116605203 16493 A G 0.38734610156498067 0.6985 +rs112063427 20329 T C 0.44738098876906346 0.6546 +rs7559233 22215 G A 0.20304482062345955 0.8391 +rs79450304 24363 G A 0.42683432978658414 0.6695 +rs115471281 25192 T C 0.2712483869540411 0.7862 +rs76263041 25213 G T 0.4253246863567358 0.6706 +rs115709817 27332 T C 0.24300696740998215 0.808 +rs116577140 27641 G A 0.17331987769005128 0.8624 +rs56921550 28258 G T 0.7398351959376067 0.4594 +rs116760537 31658 C A -1.4527254423424256 0.1463 +rs75087018 32946 T C -0.09791473421149935 0.922 +rs78328985 33433 A C -0.055801424659638936 0.9555 +rs79720199 34831 C A -0.020681157428374078 0.9835 +rs4076893 37136 G A -0.28453554267162157 0.776 +rs10209856 44613 T C -0.09048728198211245 0.9279 +rs115286170 48911 A G 0.1993358980612069 0.842 +rs73140414 51053 C T -1.2921650279257821 0.1963 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr20.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr20.txt new file mode 100644 index 0000000000000000000000000000000000000000..98d53099896d7481b909598053ff92d068c5c826 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr20.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs75670495 83092 T C 0.827418320704382 0.408 +rs76107804 87000 T C -0.6798491213954184 0.4966 +rs60878529 87623 C T 0.17790192376743535 0.8588 +rs6040382 90438 T C 0.3632742859613726 0.7164 +rs6040395 90452 A G 0.6064740638013865 0.5442 +rs73562756 95358 C T -0.7505890717943063 0.4529 +rs143912933 111439 C T 1.0347193429110721 0.3008 +rs116171563 112686 C T 1.4152336548473468 0.157 +rs75428117 116730 A G 0.8332566485694051 0.4047 +rs76760245 117806 G T 0.084951435408718 0.9323 +rs80150033 118100 T C 1.4043992301921087 0.1602 +rs115482354 121800 C T 1.4639778518355124 0.1432 +rs57572545 130234 T C 1.4574217385976362 0.145 +rs74957717 137581 G A 1.4661772672966404 0.1426 +rs75836080 137894 A G 1.4661772672966404 0.1426 +rs79131632 141870 C T 1.4687522491796703 0.1419 +rs1592156 150854 T C 0.14615376971532013 0.8838 +rs150240597 151766 A G 1.8590503634152302 0.06302 +rs79240204 152296 T C 2.1267603535000115 0.03344 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr21.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr21.txt new file mode 100644 index 0000000000000000000000000000000000000000..af3510a41e3d159dcda6aa99721f81bcea75f5ee --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr21.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs145719924 13217546 T C -0.700364020094367 0.4837 +rs677115 13218025 T G 0.2884530035645208 0.773 +rs150497680 13219415 T C -0.04475825425762406 0.9643 +rs2775535 13223956 T C 0.16530998506672218 0.8687 +rs7280495 13301529 C T 1.3725251984720985 0.1699 +rs139412076 13319604 T C 0.46350839335693655 0.643 +rs146253572 13327553 C A -2.0473880373140516 0.04062 +rs11909716 13339462 G A -0.549445144792263 0.5827 +rs2821807 13339843 T C 0.90928444354862 0.3632 +rs140646948 13342140 T C 0.9066347103972063 0.3646 +rs148862823 13342408 T G 0.9089055195843461 0.3634 +rs139303780 13343111 A G 0.9053122282500755 0.3653 +rs115843694 13357602 A G 1.0596584762842292 0.2893 +rs9977359 13362993 G T -0.6401116739595979 0.5221 +rs140417843 13366565 T C 1.1459882835180781 0.2518 +rs3843784 13372652 T C 0.982811948656456 0.3257 +rs141150101 13376128 T C 1.1712457763756827 0.2415 +rs138353738 13377758 A C 1.158647251660363 0.2466 +rs138315066 13379149 A G 0.9775438095976136 0.3283 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr22.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr22.txt new file mode 100644 index 0000000000000000000000000000000000000000..c25cffc5fb09d364f9c4aa484c57507d816f6716 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr22.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs28380750 16388984 A G -1.1155845697991909 0.2646 +rs12167401 16390194 T C -0.8705498301956536 0.384 +rs12167442 16390231 T C -0.9151745556898678 0.3601 +rs9618519 16391074 A C -0.6652353089123156 0.5059 +rs9618530 16391505 C T -0.6857036573263066 0.4929 +rs9618553 16392302 A G -0.9585212129193489 0.3378 +rs9618604 16394031 T C -0.3789836570283579 0.7047 +rs574827533 16395618 A C 0.3067942305364565 0.759 +rs5992483 16396383 G A 0.2435233484170158 0.8076 +rs5993852 16397441 A C -0.6462769697236188 0.5181 +rs149164473 16399076 T C -0.6228242816302065 0.5334 +rs143312029 16399329 C T -1.0274683103165438 0.3042 +rs142899311 16406467 A G 1.0422409108836537 0.2973 +rs140131425 16407798 T G -0.39736272325668154 0.6911 +rs140986779 16410211 G A -0.30876538779818863 0.7575 +rs9617916 16413593 G A -0.7562488654359714 0.4495 +rs9617917 16413616 T G -0.5946162729491671 0.5521 +rs9618904 16415438 T C -0.867076674525299 0.3859 +rs7293182 16416156 A G -0.24778598395565438 0.8043 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr3.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr3.txt new file mode 100644 index 0000000000000000000000000000000000000000..a7ea8452b5479fb12720c17c8405895b64bfd57a --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr3.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs9757283 28369 T C -1.4462753027431765 0.1481 +rs112891019 28918 C T -0.6358104123671848 0.5249 +rs79443020 29016 G A -0.3851854803540225 0.7001 +rs17075464 31065 G A -0.7577511024877744 0.4486 +rs17075475 32592 C A -0.1912879516409447 0.8483 +rs73093440 33355 G T -1.327631115813791 0.1843 +rs73093442 33602 A C -1.1399671192861693 0.2543 +rs113390689 35760 C T -0.4598832829244015 0.6456 +rs147829840 36623 A G -0.4548738455889584 0.6492 +rs57615422 36662 G A -1.314731964265961 0.1886 +rs141871303 37399 G A -0.48680009926756046 0.6264 +rs7430093 37497 A G 0.5780949741889856 0.5632 +rs112090131 43529 A G 0.11429997792338968 0.909 +rs11922597 50465 C T -0.5552846156227579 0.5787 +rs73816907 54252 G A -1.6919264400577554 0.09066 +rs17080854 57747 C T -1.7205087749699437 0.08534 +rs17042184 64384 G T -1.9046929189747146 0.05682 +rs75086987 64923 C T -0.2011260669033334 0.8406 +rs17042667 66489 C T -1.9467893024236538 0.05156 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr4.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr4.txt new file mode 100644 index 0000000000000000000000000000000000000000..b57068324e4851c75e7e69a288c2f02616516bc9 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr4.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs9999459 69019 A G -1.6206160868363602 0.1051 +rs7689091 73647 C T -0.6277007407674332 0.5302 +rs6599369 73905 T C -1.6361891811254716 0.1018 +rs6599370 74101 A G -1.6361891811254716 0.1018 +rs10001277 74650 T G -1.6361891811254716 0.1018 +rs116711850 74699 A G -0.5922248964734069 0.5537 +rs28452624 76238 G A -1.7298896098162662 0.08365 +rs55755847 86946 G A 0.5415914255284751 0.5881 +rs147369560 87878 A G -0.6852280913780805 0.4932 +rs138298877 89449 A G -0.6243465792814676 0.5324 +rs28868010 93172 G A -0.6243465792814676 0.5324 +rs74705444 96276 T C 0.5536768811034559 0.5798 +rs7696955 101027 A G 0.554699819025218 0.5791 +rs73793513 109779 C T 0.6333578247601047 0.5265 +rs28562543 113227 T C -0.27515130037759467 0.7832 +rs73793514 115315 T C 0.5636387639106245 0.573 +rs116499764 115922 A G -0.30298669653863874 0.7619 +rs77840214 118316 A G 0.561289791005968 0.5746 +rs28796931 120178 G A -0.30771395511896565 0.7583 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr5.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr5.txt new file mode 100644 index 0000000000000000000000000000000000000000..48e598a760000cce8ba241739ac436fd725661bb --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr5.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs6859746 44306 G T 0.37588821795517735 0.707 +rs145012893 51146 A G 1.3447685176066977 0.1787 +rs112935786 63982 A G 0.7647842969003831 0.4444 +rs113884261 74104 T C 1.5972948421602948 0.1102 +rs73730597 77084 T C 1.5276478281697974 0.1266 +rs115051996 78940 A G -0.37817580223029873 0.7053 +rs112520380 81247 T G 1.5817791342138146 0.1137 +rs61194619 81853 G T -2.1126585903011947 0.03463 +rs78628132 81928 A G -0.9860674808790266 0.3241 +rs142844529 85446 C A 0.1404556389016268 0.8883 +rs111333430 86652 T C -2.490955709773089 0.01274 +rs57255673 87179 A G 1.4866775303431161 0.1371 +rs115670594 87936 T C 0.6169010412215742 0.5373 +rs80098533 88648 G A -2.3420139114283676 0.01918 +rs56757976 89061 C T 1.6737995542110682 0.09417 +rs75282059 92662 A G -1.7582204909391155 0.07871 +rs112340349 94802 C T -1.1717436312591416 0.2413 +rs139901098 97086 G A 0.9437449459863396 0.3453 +rs75072481 97656 T C 0.9437449459863396 0.3453 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr6.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr6.txt new file mode 100644 index 0000000000000000000000000000000000000000..cd1c65fbdfd5f9e25017b0a4b5a7d77c290974c6 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr6.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs80135912 206332 A G -1.5117400726567924 0.1306 +rs111675345 206506 A G -1.3793073867704095 0.1678 +rs79232348 208304 C A 0.29119785890756006 0.7709 +rs115879180 214532 T C -0.42463880531147885 0.6711 +rs58565989 217020 T C 0.5973106430122742 0.5503 +rs73716623 217498 C T 1.091620367434161 0.275 +rs6924095 219382 C A 0.9561429857974166 0.339 +rs6916597 220909 A G 0.6817453281021549 0.4954 +rs9501753 221146 A G 0.8496854318655572 0.3955 +rs56227808 224181 G A 1.0576829740348601 0.2902 +rs73716626 224900 G A 0.8520253902513293 0.3942 +rs115774404 227361 G A 0.6551052378148426 0.5124 +rs73358071 227476 A G 0.5268467716394079 0.5983 +rs114198048 228002 T C -1.2994195092901182 0.1938 +rs9501765 228257 A G 0.30850249767111615 0.7577 +rs6928296 229975 A G 0.8681723290008365 0.3853 +rs184485383 231232 T C 0.7218283778282386 0.4704 +rs113422373 231464 A C -1.3219043611865333 0.1862 +rs9503022 231934 C T -0.11770677301765796 0.9063 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr7.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr7.txt new file mode 100644 index 0000000000000000000000000000000000000000..cf3745788eb40e9fa9ad5374a8e95eeeaba6b979 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr7.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs73260516 43523 T G -0.5399956969109158 0.5892 +rs139582135 49802 G A -0.47035697212115735 0.6381 +rs115287985 50696 C T 1.2149110993858605 0.2244 +rs57985374 52614 C A -0.5577721243412648 0.577 +rs78371858 54014 C A -0.7784564008242725 0.4363 +rs59663426 56062 C T -0.30062561048401626 0.7637 +rs6958046 61059 G T -1.4592365943628538 0.1445 +rs59745743 64225 A G -1.4020510595152287 0.1609 +rs60002145 65722 C T -1.0000217133229932 0.3173 +rs189935960 78526 T C -0.4930178144844652 0.622 +rs141609973 79500 A G 0.604216067292683 0.5457 +rs138306395 80848 T C -0.9787571229182337 0.3277 +rs77933327 81501 A G 0.3545856875608165 0.7229 +rs76842904 81704 T C -0.32563569794985947 0.7447 +rs79842796 82361 A G -0.1554075911522009 0.8765 +rs113999154 83041 C T -1.2228138846691203 0.2214 +rs116064195 84671 T C -0.8588921875845846 0.3904 +rs4916953 85608 T C -0.10938138218836785 0.9129 +rs74463401 88978 T G -0.01880081959118767 0.985 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr8.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr8.txt new file mode 100644 index 0000000000000000000000000000000000000000..59fb6ce3b2076e225278ded0b72dd4a2c5141f25 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr8.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs146807239 213476 A G -1.5739457147782714 0.1155 +rs144306319 215547 T C -1.2170110806011425 0.2236 +rs116044697 216174 G T 1.8730607250448792 0.06106 +rs140040645 216869 C T 0.4221712839691185 0.6729 +rs6983021 218012 C A -0.0305856329942295 0.9756 +rs111725148 218099 G A -0.8760552476728832 0.381 +rs114652438 219133 C T -1.2364266906422612 0.2163 +rs144818401 219156 C T 1.6546279023510797 0.098 +rs79793981 220598 T C -0.2742402478054069 0.7839 +rs80219977 221485 T G 1.8839628554729526 0.05957 +rs55916701 221858 T C 0.3787143446390125 0.7049 +rs116785726 223190 C A -1.2629698923484662 0.2066 +rs138272050 224367 G T 1.9490454268140434 0.05129 +rs144432751 225153 A G -1.2750261115528845 0.2023 +rs115862822 226573 A C -1.2889944961869377 0.1974 +rs116566009 226891 T G -1.283548440740782 0.1993 +rs116095585 227771 T G 2.084882142663861 0.03708 +rs116317051 227886 A G -1.2907222686230613 0.1968 +rs137895174 228326 G T -1.294189421043867 0.1956 diff --git a/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr9.txt b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr9.txt new file mode 100644 index 0000000000000000000000000000000000000000..bb3c63e04d8e8c5404cdbfd54129d1827cfb2cfe --- /dev/null +++ b/jass/test/data_real/z_MAGIC_GLUCOSE-TOLERANCE_chr9.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs116717151 41440 A G 0.388021666217977 0.698 +rs114637885 41871 G A 0.34020785924482994 0.7337 +rs111492062 41971 C T -0.52699076731004 0.5982 +rs149082877 43570 G T -0.3953291353923789 0.6926 +rs180991587 44451 G T -0.277234565466102 0.7816 +rs2998935 50568 C A -0.08080126756095996 0.9356 +rs73638071 54662 T G -0.4580729944860271 0.6469 +rs7026431 58009 C T -0.2906748607752636 0.7713 +rs7045191 58655 T G -0.46839799722257836 0.6395 +rs137872030 60485 C T -0.1308423759131046 0.8959 +rs150868700 61069 A C -0.5166507239163766 0.6054 +rs112871504 61163 A G -0.5099307187085109 0.6101 +rs111816607 61272 C A -0.38383600529322387 0.7011 +rs144213049 74190 C A 0.3079767813531181 0.7581 +rs28757748 82870 A G -0.09375975708738724 0.9253 +rs7850893 83216 A G -0.02607188745355935 0.9792 +rs189499725 83379 C T -0.14906796961784197 0.8815 +rs28689902 83459 T C 0.49075463387676 0.6236 +rs28620663 83869 A C -0.08696416039995115 0.9307 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr1.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr1.txt new file mode 100644 index 0000000000000000000000000000000000000000..cb089ec8f08d44aab0d1b3bef2b47cc6ba84586d --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr1.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs146592146 860373 T C 0.7582522282510589 0.4483 +rs4245756 864083 T C -1.0291695678695472 0.3034 +rs116263168 917122 T C 0.1343826506102885 0.8931 +rs115083420 917137 G A 0.1343826506102885 0.8931 +rs28729864 925577 A G -0.8464531482145013 0.3973 +rs114644749 927288 T C -0.03710661205920427 0.9704 +rs113954963 931785 A G -0.7464427549375229 0.4554 +rs2341359 932949 A C 0.5417365601128168 0.588 +rs116804576 938082 T G 1.0868570279650567 0.2771 +rs112260347 941013 A G 0.9549558979724317 0.3396 +rs74045014 949255 A G -0.31718925838689704 0.7511 +rs74045015 949663 C T -0.30850249767111615 0.7577 +rs76451547 950524 T C -0.26955841028015787 0.7875 +rs77259182 954839 A C 0.7462771693616918 0.4555 +rs74045032 971837 T C 1.2453585022751121 0.213 +rs56185812 973842 A G 2.0823556089149857 0.03731 +rs114241396 974884 A G 0.7869690230467802 0.4313 +rs115113522 978318 T C -1.4946722498066165 0.135 +rs74045071 993364 G T 2.938598381767557 0.003297 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr10.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr10.txt new file mode 100644 index 0000000000000000000000000000000000000000..d5659d93122e43f0ad8b664bc772ee1ca110376d --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr10.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs76485537 85582 A G -1.3519228404397439 0.1764 +rs184038273 85640 G A -1.4973585021438371 0.1343 +rs112007070 87419 A G -0.6944500745373278 0.4874 +rs116091256 88234 A G -1.4946722498066165 0.135 +rs9419554 89297 A G -0.7339158932693709 0.463 +rs9419555 90196 A G 0.0305856329942295 0.9756 +rs141986392 98954 C A 0.08658674787384586 0.931 +rs79349032 99341 C A -1.242912714165389 0.2139 +rs9419558 102864 C T -0.19908021192895084 0.8422 +rs9419559 102866 C T -0.19908021192895084 0.8422 +rs112431531 107782 G T -1.635711411716127 0.1019 +rs114622828 110302 C A -1.635711411716127 0.1019 +rs9419476 111040 G A -0.030711023285021 0.9755 +rs58113202 114085 T C -0.2330790791178248 0.8157 +rs150425854 114445 G A -1.5645008223604062 0.1177 +rs9419417 115247 T C -0.0829390545025237 0.9339 +rs146984218 126748 A G -0.6254130489609949 0.5317 +rs116193599 128442 G A -0.628311346644075 0.5298 +rs140464648 130980 A G -0.8865894052662106 0.3753 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr11.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr11.txt new file mode 100644 index 0000000000000000000000000000000000000000..d440780b4cfb6b3dce2878894d5a570c231c7267 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr11.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs10400290 203892 A G -0.5876012080365343 0.5568 +rs73386645 205838 T C -0.5465324327022534 0.5847 +rs185553134 206984 A G 0.6721314757652973 0.5015 +rs183891668 209076 T C -0.2486907558521338 0.8036 +rs74044911 212202 T C 0.3067942305364565 0.759 +rs73386658 218811 A G -0.44959845822632 0.653 +rs78217432 219983 T C -0.8133803882134044 0.416 +rs13328840 220345 G A -0.513788312677947 0.6074 +rs56407328 221807 C T -0.4273835321237564 0.6691 +rs116755906 222621 A G -0.6639848618709068 0.5067 +rs114769259 222625 A G -0.5898369019589237 0.5553 +rs59986826 225823 A G -0.7401648054710047 0.4592 +rs144276621 227308 T C 0.09665547500856757 0.923 +rs111352645 228728 C T -1.2915876015674639 0.1965 +rs58643462 228910 A C -0.7390115235060684 0.4599 +rs150716073 229355 T G -0.30338037479257596 0.7616 +rs73394716 234839 A C -0.48609473454105423 0.6269 +rs116301602 235482 C A -0.2915901597762286 0.7706 +rs1056098 235619 C A -0.48031981671481083 0.631 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr12.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr12.txt new file mode 100644 index 0000000000000000000000000000000000000000..1a1b2e561280bf7161e1f74e068350c2e23e6cf5 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr12.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs112469599 79525 T C -0.21495808236206582 0.8298 +rs115367131 80881 A G 1.4754187406739192 0.1401 +rs74570921 85685 A G 1.9166689682620945 0.05528 +rs76981648 91812 A G 1.556454727919712 0.1196 +rs144323695 103000 T C 0.549299398631197 0.5828 +rs57212972 120335 T C -0.651072015801326 0.515 +rs2368788 120519 T G 1.148408418469763 0.2508 +rs60425136 126995 C T -0.19052213451738867 0.8489 +rs12312097 127246 T C 1.1800005403477205 0.238 +rs12313653 127668 T C -1.0029188849738444 0.3159 +rs12298934 127691 A G -0.9712978080753466 0.3314 +rs59356318 128298 G A -0.9533752043374876 0.3404 +rs4980846 142668 C T 2.016669642292922 0.04373 +rs73603120 143399 A G 0.06609775273301115 0.9473 +rs74055582 148277 A G -0.7847502743446662 0.4326 +rs59589404 148536 A G -0.778965564347545 0.436 +rs7135530 148770 A C 1.3770396159854206 0.1685 +rs58582184 149197 T C -0.7737138970355525 0.4391 +rs56946554 149199 T C -0.7710116943531238 0.4407 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr13.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr13.txt new file mode 100644 index 0000000000000000000000000000000000000000..2f9486e7ac874cffe64d38f7e462370f2d206381 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr13.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs9578322 18687390 A G 0.22947467746690142 0.8185 +rs115509363 18688541 T G 0.05442068377809232 0.9566 +rs9578324 18690236 A G 0.32167357338177743 0.7477 +rs17841824 18701860 C T -1.7288832078949048 0.08383 +rs58910040 18702139 T C -1.7288832078949048 0.08383 +rs9578337 18703908 T C 0.10471746889621172 0.9166 +rs140803900 18710308 C T -1.3159226668637165 0.1882 +rs116805056 18716995 A G -1.3000028277439486 0.1936 +rs145102868 18717150 T C -1.3020479341264286 0.1929 +rs11838759 18717765 G A -1.2979631441629877 0.1943 +rs182081154 18718164 A C -1.2979631441629877 0.1943 +rs139487659 18766808 G T 0.9342014265690365 0.3502 +rs143231601 18767863 C T 1.1459882835180781 0.2518 +rs141074623 18769648 A C 1.251642941302396 0.2107 +rs142765727 18854497 C T -1.949548137515214 0.05123 +rs151066829 18854498 A G -1.949548137515214 0.05123 +rs145580380 18858426 A C 0.20803709924672883 0.8352 +rs2440013 18866879 A C -2.0737772817940647 0.0381 +rs11838665 18867241 A G 0.33397291110836397 0.7384 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr14.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr14.txt new file mode 100644 index 0000000000000000000000000000000000000000..6545972cf82233259c343f8eb1f660284a94bd17 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr14.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs10467723 19898743 A G 1.2505464453929471 0.2111 +rs77106479 19956806 T C -0.564226492885322 0.5726 +rs1970435 19973007 T C -0.8966606951241568 0.3699 +rs73571304 19974162 G A -0.33702241878787814 0.7361 +rs57711077 19974407 C A -0.37548473106509017 0.7073 +rs28685669 19974877 T C 1.9189552299595438 0.05499 +rs79881678 19975490 G A 0.6776399648779957 0.498 +rs115091581 19976937 T C 0.5853684472880941 0.5583 +rs7157946 19977399 T C -0.5680514983389826 0.57 +rs7150745 19977686 T C 0.5507573860881283 0.5818 +rs28630531 19978098 A G 0.5459504470674384 0.5851 +rs74033739 19978190 T G -0.5608497035531858 0.5749 +rs60953949 19980214 T C -0.5630512295665864 0.5734 +rs1959609 19981797 A C -0.1887356615318079 0.8503 +rs58716355 19982567 C T -0.26150901289182144 0.7937 +rs1959607 19984301 C T -0.5652554879204319 0.5719 +rs28712501 19986000 G A 1.1742372739167983 0.2403 +rs2318559 19987730 A G 0.3414032882357271 0.7328 +rs7144309 19990148 G A 0.5262708981425639 0.5987 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr15.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr15.txt new file mode 100644 index 0000000000000000000000000000000000000000..f3131dabe4169a8adb9869af6249673a78b50359 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr15.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs112562494 23436530 A G 1.7842072172269912 0.07439 +rs112450607 23438207 T C 0.1386838254472407 0.8897 +rs28691768 23439271 T C 0.16556410172076524 0.8685 +rs140591462 23441534 C T -0.380465367231468 0.7036 +rs112742309 23441583 T G 1.8166547139553366 0.06927 +rs73423916 23442561 A C -1.245630716663392 0.2129 +rs113876688 23442829 A G -1.3040985008212864 0.1922 +rs56854950 23443190 A G 1.4810246686947526 0.1386 +rs11856020 23443197 T G -1.3874650541546556 0.1653 +rs113685354 23444089 T C 0.07816098059482443 0.9377 +rs111541638 23444317 A G 0.06835882250319913 0.9455 +rs143079147 23446014 C A 1.7881612256681116 0.07375 +rs17118818 23446257 A G 0.14767406541203576 0.8826 +rs77168685 23446850 A G -0.9797693190941965 0.3272 +rs112047284 23448472 C T 1.7870463348841916 0.07393 +rs28555570 23449563 T C 0.1317272891239684 0.8952 +rs140135687 23454141 T C -1.0989267904375757 0.2718 +rs11852762 23456938 A C -1.3864812556973196 0.1656 +rs17118742 23459484 T C 1.0370769425436042 0.2997 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr16.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr16.txt new file mode 100644 index 0000000000000000000000000000000000000000..d9e909384274cfe140ef05e78a6751bc7b98e62c --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr16.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs2541687 34780 A G -0.16747031862326395 0.867 +rs2562134 35187 T C 0.2140603438640795 0.8305 +rs2541692 35704 T G 0.15020865204317832 0.8806 +rs2541695 36756 A G 1.6104484074788599 0.1073 +rs148182028 37829 G A 2.727946206172036 0.006373 +rs798668 38087 G A 1.6141264558623125 0.1065 +rs2541696 38165 A C -0.327486436511776 0.7433 +rs798669 38553 A G 1.1271004810380827 0.2597 +rs150983641 39681 T C 2.8547552964429794 0.004307 +rs798671 40070 A G 1.0993853915396492 0.2716 +rs2562140 40599 C T 1.104214733306532 0.2695 +rs149364779 41622 G A 2.8761957617326317 0.004025 +rs60038985 41875 A C 1.9780771844335983 0.04792 +rs60771648 41922 A G 1.9492129423186824 0.05127 +rs8053008 42976 C T 1.9581705804632765 0.05021 +rs216584 44048 G A -0.4138281043785617 0.679 +rs146240039 44117 A G 0.8927333243208561 0.372 +rs144123717 44126 A G 0.8886336505799364 0.3742 +rs57827257 44853 A G 0.8078099436349899 0.4192 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr17.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr17.txt new file mode 100644 index 0000000000000000000000000000000000000000..aa058586f04665ce9daebeb8489f37e8053fd8e4 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr17.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs34845611 151604 T C -0.34472649181069054 0.7303 +rs139915273 154787 C T -1.1657884206980544 0.2437 +rs111371606 158997 C T -1.0861785620222 0.2774 +rs144418494 160286 A G -0.8313073915942564 0.4058 +rs148525551 172517 T G -1.4680155465458824 0.1421 +rs78727535 177618 A G -0.9743153204859587 0.3299 +rs151226741 177735 A G 0.15629563097020716 0.8758 +rs143155804 178043 C T 0.1008116230373139 0.9197 +rs144218289 178273 A G 0.1008116230373139 0.9197 +rs148804384 178301 G A 0.10358335170409867 0.9175 +rs112537445 178436 G A 0.971900602571379 0.3311 +rs144351589 178535 A G 0.10358335170409867 0.9175 +rs139498593 178704 G A 0.10622983495269706 0.9154 +rs145293876 179280 T C 0.13627991657922048 0.8916 +rs145916009 179394 G A -1.932887971255168 0.05325 +rs140977591 179524 A G 0.1483076225009475 0.8821 +rs150202443 179591 G T 0.1570569060453946 0.8752 +rs142295692 179727 T C 0.15743757769090128 0.8749 +rs142975353 179872 T G 0.027576405739391716 0.978 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr18.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr18.txt new file mode 100644 index 0000000000000000000000000000000000000000..09c34bc852822cd45db5d283a1fe6b9c04c257cc --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr18.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs147750431 125380 T C -0.6694632751287782 0.5032 +rs114380142 140670 T C 0.9917899524402435 0.3213 +rs7232311 154770 G A 0.5136453027550812 0.6075 +rs114034581 161371 C T 0.4999646055353832 0.6171 +rs149779470 162938 T C 0.43150667525140035 0.6661 +rs113995585 169252 A G -0.25477096757062295 0.7989 +rs3859369 180069 G T -0.19997517044776564 0.8415 +rs28463286 185127 C T -0.5210958525629237 0.6023 +rs141844059 189606 T C 0.6333578247601047 0.5265 +rs116443871 190651 A G -0.06999203404538498 0.9442 +rs115907518 190653 T C -0.15325143173423963 0.8782 +rs149038606 194853 T C -0.15439283850903082 0.8773 +rs147838874 203758 T C -0.14374732411170665 0.8857 +rs115911406 204518 C T -0.14691387511843532 0.8832 +rs115627554 207573 A G -0.11934756669227511 0.905 +rs111488741 214930 C T -0.0638370208333243 0.9491 +rs114579562 221175 C T -0.10950746646938445 0.9128 +rs192680454 222229 G A -0.101567471336545 0.9191 +rs147770653 242201 T G -0.17662876259615523 0.8598 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr19.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr19.txt new file mode 100644 index 0000000000000000000000000000000000000000..94747dc869de895f930d2ca2da4633566caeebe5 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr19.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs112945990 285325 A G 0.4889176492330347 0.6249 +rs73496485 287225 G A -0.5428980480297118 0.5872 +rs111230410 287786 T C 0.6382668304718886 0.5233 +rs73916866 288885 A G -2.1389465183836354 0.03244 +rs55822606 298597 T G -0.6555712948194435 0.5121 +rs11880251 301982 G A 1.327933731796592 0.1842 +rs73916873 304475 A G 1.3386028433542072 0.1807 +rs73916875 304667 A G 1.3105791121681174 0.19 +rs112357940 306329 A G 1.2130780008459539 0.2251 +rs35042658 307282 C T 1.070487349972131 0.2844 +rs59415447 308681 A G 1.0422409108836537 0.2973 +rs7253289 314107 T C 0.6376523653718142 0.5237 +rs73916878 314542 T C 0.671189212380617 0.5021 +rs141796926 318914 A G 1.8015260829511117 0.07162 +rs114812045 319373 C A 1.4691208996137342 0.1418 +rs10414947 322451 A G 0.35098446908207886 0.7256 +rs10415364 322645 A G -1.023016594057365 0.3063 +rs60752755 323096 T C -2.313229945023171 0.02071 +rs192057061 324257 G A 1.6295341103187881 0.1032 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr2.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr2.txt new file mode 100644 index 0000000000000000000000000000000000000000..5f69e55440e65d199dae197b01809bc9bc3b5816 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr2.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs143146982 13181 T C -0.8453776842231883 0.3979 +rs112859695 13366 G T -0.8279479109049943 0.4077 +rs73138526 13637 G A -0.9429626649138614 0.3457 +rs112217841 14898 C A -0.8359198403455846 0.4032 +rs112288223 15937 G A 1.5349341662705682 0.1248 +rs114844818 16187 T C 1.5349341662705682 0.1248 +rs116605203 16493 A G 1.5349341662705682 0.1248 +rs112063427 20329 T C 0.2644930752974572 0.7914 +rs7559233 22215 G A 0.9412046387972497 0.3466 +rs79450304 24363 G A 0.28010102282769433 0.7794 +rs115471281 25192 T C 1.941563212418208 0.05219 +rs76263041 25213 G T 0.2883223505238087 0.7731 +rs115709817 27332 T C 1.7153013019446486 0.08629 +rs116170552 27499 A G -0.9952802101965204 0.3196 +rs116577140 27641 G A 1.7627657868271436 0.07794 +rs56921550 28258 G T -0.07564692831832323 0.9397 +rs114755531 29378 A G -1.8303340685028078 0.0672 +rs116760537 31658 C A -1.6314281932233254 0.1028 +rs75087018 32946 T C -1.4328524797350555 0.1519 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr20.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr20.txt new file mode 100644 index 0000000000000000000000000000000000000000..a50f8d002d8663f20f27c000fe175669be568dca --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr20.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs189899941 80638 T C -0.2015097581884119 0.8403 +rs75670495 83092 T C 0.29590844704328084 0.7673 +rs76107804 87000 T C -0.12667201016581162 0.8992 +rs60878529 87623 C T 0.628311346644075 0.5298 +rs6040382 90438 T C -0.27293913867490804 0.7849 +rs6040395 90452 A G -0.07275635817603743 0.942 +rs143912933 111439 C T 1.6896757765076187 0.09109 +rs116171563 112686 C T 1.3871369721520654 0.1654 +rs75428117 116730 A G 1.0196383709120005 0.3079 +rs76760245 117806 G T 1.3623102316082243 0.1731 +rs80150033 118100 T C 1.361993298653988 0.1732 +rs115482354 121800 C T 0.6841190396162851 0.4939 +rs57572545 130234 T C 1.318309685459184 0.1874 +rs74957717 137581 G A 1.3288423101856452 0.1839 +rs75836080 137894 A G 1.3288423101856452 0.1839 +rs79131632 141870 C T 1.294189421043867 0.1956 +rs117815495 148434 T C -0.3957357219272205 0.6923 +rs4815966 148972 G A -0.6197840059693434 0.5354 +rs73892034 149298 G A 0.2725488961195224 0.7852 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr21.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr21.txt new file mode 100644 index 0000000000000000000000000000000000000000..bc6fef5db4f1415f942a8b986c2989d637c3ed46 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr21.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs1297078 13998294 T C -0.008271967640830298 0.9934 +rs139639182 14002903 A G -0.49698447408951785 0.6192 +rs79073717 14077602 G A 0.028328688078074527 0.9774 +rs141871761 14081105 A C -0.3244465265618216 0.7456 +rs114322999 14083322 A G 0.24429804174480832 0.807 +rs73894204 14084334 A C 0.2213755865300981 0.8248 +rs60539781 14084553 A C -0.5229630023392787 0.601 +rs148689163 14085683 T C -0.5132163359939312 0.6078 +rs145886903 14086519 G A -0.06283235650443772 0.9499 +rs116344414 14087474 T C 0.4952835231470191 0.6204 +rs74812560 14090793 A G 0.6467403557968145 0.5178 +rs139549929 14091898 C T 0.7948513098974944 0.4267 +rs142410563 14092120 A G 0.7984662000994558 0.4246 +rs113746514 14092224 A G 0.6585263047404852 0.5102 +rs149684161 14092255 A G 0.7963992741408246 0.4258 +rs149423811 14092889 A C 1.026831104894426 0.3045 +rs144795798 14093013 C A 0.8104179582590435 0.4177 +rs111905652 14093485 T C 0.6287694548209457 0.5295 +rs147554603 14093789 T C 0.5086465413284251 0.611 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr22.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr22.txt new file mode 100644 index 0000000000000000000000000000000000000000..4303037442e60509e152f368ea98135825b06113 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr22.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs140986779 16410211 G A -0.44364398454839493 0.6573 +rs7293182 16416156 A G -0.47694680719273536 0.6334 +rs4010560 16416625 G A -0.44475059695052915 0.6565 +rs144010528 16417607 A G -0.45084675630534354 0.6521 +rs116324977 16417683 T C -0.41915890962625996 0.6751 +rs7290329 16449033 T C -1.1685127483485365 0.2426 +rs151202789 16449870 A G -1.1685127483485365 0.2426 +rs7290826 16575950 C T -0.08797065451275167 0.9299 +rs73876603 16799541 G A 2.0200326592114597 0.04338 +rs76276024 16801649 C T 2.0050285027862698 0.04496 +rs9618886 16809968 C T 2.1218540038908884 0.03385 +rs8140802 16815810 A C 1.839375330715957 0.06586 +rs9618891 16818069 C T 1.9213309311722535 0.05469 +rs9618893 16820602 A G 1.8223625041236524 0.0684 +rs9618894 16821381 A G 1.7353998875375154 0.08267 +rs6518618 16828627 T C 1.4904726598268778 0.1361 +rs6518619 16828665 G A 1.4231247319149192 0.1547 +rs28378217 16831059 G T -1.7631808057021894 0.07787 +rs150223787 16831399 A G -1.837880609361476 0.06608 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr3.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr3.txt new file mode 100644 index 0000000000000000000000000000000000000000..c8fe3773809f3bb3214b5fea4ecee2e3dde88a93 --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr3.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs28754383 21230 C A -1.3667617359933668 0.1717 +rs73093420 24033 C T 0.7878234199702983 0.4308 +rs112360399 25204 C T 0.8597987290472034 0.3899 +rs111734835 27141 A C 0.9670880876959815 0.3335 +rs9757283 28369 T C -0.053542084671506646 0.9573 +rs112891019 28918 C T 0.5526545222224959 0.5805 +rs79443020 29016 G A 0.6190248324377549 0.5359 +rs17075464 31065 G A 0.37615724321254107 0.7068 +rs17075475 32592 C A 0.43908492752066713 0.6606 +rs73093440 33355 G T -0.02945714178004617 0.9765 +rs73093442 33602 A C -0.04739300996743066 0.9622 +rs113390689 35760 C T 0.327486436511776 0.7433 +rs147829840 36623 A G 0.3318533464368165 0.74 +rs57615422 36662 G A -0.011029388020359047 0.9912 +rs141871303 37399 G A 0.5242567129465923 0.6001 +rs7430093 37497 A G 0.2350112519270095 0.8142 +rs112090131 43529 A G -1.5316857521225444 0.1256 +rs11922597 50465 C T -1.8575707180906276 0.06323 +rs73816907 54252 G A -0.13703895996114857 0.891 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr4.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr4.txt new file mode 100644 index 0000000000000000000000000000000000000000..c8ab2c7e7392b317fcac37c638f8f3fab6c6169d --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr4.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs9999459 69019 A G 0.911750639239125 0.3619 +rs7689091 73647 C T 1.5468475960422612 0.1219 +rs6599369 73905 T C 0.9737111087460866 0.3302 +rs6599370 74101 A G 0.9737111087460866 0.3302 +rs10001277 74650 T G 0.9737111087460866 0.3302 +rs116711850 74699 A G 0.2955156485892212 0.7676 +rs28452624 76238 G A 1.0047858060706991 0.315 +rs55755847 86946 G A -0.8558152112932212 0.3921 +rs147369560 87878 A G 0.2333366517317186 0.8155 +rs138298877 89449 A G 1.6880064020719672 0.09141 +rs28868010 93172 G A 1.6979881415590599 0.08951 +rs74705444 96276 T C -0.8729322623983911 0.3827 +rs7696955 101027 A G -0.8946017799610746 0.371 +rs73793513 109779 C T -0.9147935910174844 0.3603 +rs28562543 113227 T C 0.8128570882348517 0.4163 +rs73793514 115315 T C -0.8838077538299646 0.3768 +rs116499764 115922 A G 0.8083311066169101 0.4189 +rs77840214 118316 A G -0.8886336505799364 0.3742 +rs28796931 120178 G A 0.7991559337209421 0.4242 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr5.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr5.txt new file mode 100644 index 0000000000000000000000000000000000000000..052f70d135420160da1ec8242dea97fc73cb80be --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr5.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs61194619 81853 G T -0.8514849861038246 0.3945 +rs78628132 81928 A G -1.336150765026541 0.1815 +rs139901098 97086 G A 0.2974800981844451 0.7661 +rs75072481 97656 T C 0.2952538082853543 0.7678 +rs115519963 104555 A C 0.04262558517694437 0.966 +rs76971931 105881 T G 0.10383536618188056 0.9173 +rs111205984 110077 T C -1.2149110993858605 0.2244 +rs114036206 113307 A G 0.9926101016993928 0.3209 +rs143295530 122294 G A 1.0390101838826051 0.2988 +rs113973941 127174 C T -1.254115575130515 0.2098 +rs114946231 130746 A G 0.9850490055854584 0.3246 +rs73022532 131144 A G 0.36876888334718827 0.7123 +rs115781435 140149 G A -1.1677688902374461 0.2429 +rs116756667 146063 G A 0.5567474389081384 0.5777 +rs114247727 146466 T C 0.3937034417957639 0.6938 +rs56197951 147806 G A 0.4851076299792638 0.6276 +rs114970380 149632 T G 0.4004840893580089 0.6888 +rs75860075 150378 T C -1.4965898991545747 0.1345 +rs55677259 152629 T C 0.4784920940264127 0.6323 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr6.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr6.txt new file mode 100644 index 0000000000000000000000000000000000000000..e619862e5bfa44b48dc1fb389048bb09994c7e5e --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr6.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs73716605 202648 C T 0.10018179346565402 0.9202 +rs79232348 208304 C A -0.6414967373378818 0.5212 +rs115879180 214532 T C 1.4878138200737292 0.1368 +rs73716623 217498 C T -0.8747682793660634 0.3817 +rs6924095 219382 C A 0.9195652368030155 0.3578 +rs6916597 220909 A G -0.24843222885412214 0.8038 +rs9501753 221146 A G -0.2365576217801652 0.813 +rs56227808 224181 G A 0.30548078809939727 0.76 +rs73716626 224900 G A 1.1193285505549164 0.263 +rs115774404 227361 G A 1.9143143653591375 0.05558 +rs73358071 227476 A G -0.35752341542966387 0.7207 +rs114198048 228002 T C 1.7308417120092539 0.08348 +rs9501765 228257 A G 0.42903191367560517 0.6679 +rs6928296 229975 A G 0.31982631242188214 0.7491 +rs184485383 231232 T C 0.22458774427055636 0.8223 +rs113422373 231464 A C 0.9398392937177551 0.3473 +rs9503022 231934 C T 2.2177776023119407 0.02657 +rs9501770 232061 A G 1.9934700495036604 0.04621 +rs61363675 232264 A G -1.0375062166378153 0.2995 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr7.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr7.txt new file mode 100644 index 0000000000000000000000000000000000000000..2fda344aebb5c56b58bc162e3820a757521f767a --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr7.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs75551652 41331 A G -0.3149494961466851 0.7528 +rs73260516 43523 T G -0.8523857979575751 0.394 +rs116588193 46311 T G -0.5541152120663404 0.5795 +rs139582135 49802 G A -0.24223251733170045 0.8086 +rs57985374 52614 C A -0.34313088122763247 0.7315 +rs78371858 54014 C A 0.08620934768077301 0.9313 +rs59663426 56062 C T 0.22227475905476163 0.8241 +rs58975330 58031 A C 0.6882426341516656 0.4913 +rs116446936 61386 T C -1.1712457763756827 0.2415 +rs59745743 64225 A G -0.6172042694379276 0.5371 +rs60002145 65722 C T 0.08746739638045922 0.9303 +rs57522210 65724 C T -1.7645465817270851 0.07764 +rs116408760 65945 A G -1.2154355922611497 0.2242 +rs73669506 67940 C A -0.7673053303043246 0.4429 +rs189935960 78526 T C -0.28010102282769433 0.7794 +rs141609973 79500 A G 0.46030125569202546 0.6453 +rs138306395 80848 T C -1.0321539579593002 0.302 +rs77933327 81501 A G 0.9015424012999085 0.3673 +rs11185554 81651 T C -0.2127781593094606 0.8315 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr8.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr8.txt new file mode 100644 index 0000000000000000000000000000000000000000..d8749b0ea13259e713d7a7fa6749e1a6c9b7df3f --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr8.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs146807239 213476 A G 1.3881216665664966 0.1651 +rs140040645 216869 C T 1.2599150747888066 0.2077 +rs6983021 218012 C A 0.2076528952685886 0.8355 +rs111725148 218099 G A 0.4866590069559826 0.6265 +rs114652438 219133 C T -1.8670113705690847 0.0619 +rs79793981 220598 T C 0.33888017469195286 0.7347 +rs55916701 221858 T C 0.0833163500932955 0.9336 +rs116785726 223190 C A -1.8961516081422147 0.05794 +rs138272050 224367 G T 0.7180929124096807 0.4727 +rs144432751 225153 A G -1.9077773455546887 0.05642 +rs115862822 226573 A C -1.898046172084157 0.05769 +rs116566009 226891 T G -1.9172986606428128 0.0552 +rs116095585 227771 T G -0.012784152420787676 0.9898 +rs116317051 227886 A G -1.9290875042780737 0.05372 +rs137895174 228326 G T -1.926676165567509 0.05402 +rs183201205 233713 C T -2.002509150119619 0.04523 +rs6980500 234308 A G 0.8981604785280058 0.3691 +rs190791820 235006 A G -2.015139829237459 0.04389 +rs192402078 235785 C T -1.0332220419939526 0.3015 diff --git a/jass/test/data_real/z_MAGIC_HBA1C_chr9.txt b/jass/test/data_real/z_MAGIC_HBA1C_chr9.txt new file mode 100644 index 0000000000000000000000000000000000000000..fb3528e2eb70c7fa693d2ce005db210bf9b6e9dd --- /dev/null +++ b/jass/test/data_real/z_MAGIC_HBA1C_chr9.txt @@ -0,0 +1,20 @@ +rsID pos A0 A1 Z P +rs2998935 50568 C A -0.7411541169693973 0.4586 +rs73638071 54662 T G -0.08004684318254925 0.9362 +rs28757748 82870 A G -0.7888494560537967 0.4302 +rs7872275 141836 A G -0.9439406065093224 0.3452 +rs9657568 144530 C T -0.9694915384178733 0.3323 +rs149055759 169154 C T 0.26773929582365047 0.7889 +rs147090847 170520 A G 0.26773929582365047 0.7889 +rs139575870 172365 C T 0.26099028388622275 0.7941 +rs141283707 185919 G A -0.08620934768077301 0.9313 +rs148361463 190367 C T 0.7000437222098311 0.4839 +rs185694740 191004 C T -0.672445696178604 0.5013 +rs146433614 192091 C A -0.40265777624923366 0.6872 +rs115555383 202377 T G 0.9870869800410371 0.3236 +rs113505127 204279 T C 1.5406581800048256 0.1234 +rs73370563 206459 T C 0.309291232096629 0.7571 +rs74761242 208880 C T 0.7167959679299853 0.4735 +rs73370593 212333 C T 2.1008971006419306 0.03565 +rs140428543 214005 T C 1.575244583128945 0.1152 +rs116104753 214593 C T -0.6649225996985584 0.5061 diff --git a/jass/test/data_test1/COV.txt b/jass/test/data_test1/COV.csv similarity index 100% rename from jass/test/data_test1/COV.txt rename to jass/test/data_test1/COV.csv diff --git a/jass/test/data_test2/COV.txt b/jass/test/data_test2/COV.csv similarity index 100% rename from jass/test/data_test2/COV.txt rename to jass/test/data_test2/COV.csv diff --git a/jass/test/howto.md b/jass/test/howto.md index 643e22659f045fe495315e620d8329fd09cdd33f..337de5a816a82c6592dab5dc054fe9c198a6fabf 100644 --- a/jass/test/howto.md +++ b/jass/test/howto.md @@ -1,4 +1,11 @@ # how to generate test data + +## news way +```shell + ./update_test_hdf5_files.sh +``` + +## old way ```shell jass create-inittable --input-data-path "./data_test1/z*.txt" --init-covariance-path "./data_test1/COV.txt" --init-genetic-covariance-path "./data_test1/COV.txt" --regions-map-path "./data_test1/regions.txt" --description-file-path "./data_test1/summary.csv" --init-table-path "./data_test1/initTable.hdf5" diff --git a/jass/test/trim_traits.sh b/jass/test/trim_traits.sh new file mode 100755 index 0000000000000000000000000000000000000000..977a5bcd944b3424ef1db83e42e51066bb1359a5 --- /dev/null +++ b/jass/test/trim_traits.sh @@ -0,0 +1,17 @@ +#!/bin/bash + +DATA_DIRS=`ls . -1 | grep data_` + +for DATA_DIR in $DATA_DIRS; do + if [ -f $DATA_DIR ]; then + continue; + fi + echo "Doing $DATA_DIR" + + TRAITS_TAB=`ls ${DATA_DIR}/z_* -1` + for T in $TRAITS_TAB; do + cat $T | head -n 20 > /tmp/sub + mv /tmp/sub $T + done + +done \ No newline at end of file diff --git a/jass/test/update_test_hdf5_files.sh b/jass/test/update_test_hdf5_files.sh new file mode 100755 index 0000000000000000000000000000000000000000..ed467befff155a6bebedfbd10b9d2c26e1e81887 --- /dev/null +++ b/jass/test/update_test_hdf5_files.sh @@ -0,0 +1,31 @@ +#!/bin/bash + +DATA_DIRS=`ls . -1 | grep data_` + +for DATA_DIR in $DATA_DIRS; do + if [ -f $DATA_DIR ]; then + continue; + fi + echo "Doing $DATA_DIR" + + TRAITS_TAB=`ls ${DATA_DIR}/z_* -1 | cut -d"/" -f2 | cut -d"_" -f1-3 | sort|uniq` + TRAITS="" + for T in $TRAITS_TAB; do + TRAITS="${TRAITS} $T"; + done + + echo "Found traits $TRAITS" + + GEN_COV="./${DATA_DIR}/GEN_COV.csv" + if [ ! -f $GEN_COV ]; then + echo "GEN_COV not found, fallback on COV as GEN_COV" + GEN_COV="./${DATA_DIR}/COV.csv"; + fi + + echo "Creating inittable" + jass create-inittable --input-data-path "./${DATA_DIR}/z*.txt" --init-covariance-path "./${DATA_DIR}/COV.csv" --init-genetic-covariance-path ${GEN_COV} --regions-map-path "./${DATA_DIR}/regions.txt" --description-file-path "./${DATA_DIR}/summary.csv" --init-table-path "./${DATA_DIR}/initTable.hdf5" + + echo "Creating worktable" + jass create-project-data --init-table-path "${DATA_DIR}/initTable.hdf5" --phenotype ${TRAITS} --worktable-path ./${DATA_DIR}/worktable.hdf5 + +done \ No newline at end of file diff --git a/test_docker_compose.sh b/test_docker_compose.sh index fb19481540f7e3155e1c0c91d8a6dd749ee766d4..fccbbb1a583ce2e57273e13e20fb2d1442308ead 100755 --- a/test_docker_compose.sh +++ b/test_docker_compose.sh @@ -1,34 +1,12 @@ #!/usr/bin/env bash -docker-compose -f docker-compose.yaml -f docker-compose.test.yaml up -d --build +docker-compose -f docker-compose.yaml -f docker-compose.test.yaml up -d --build || exit 99 echo "Waiting some time for interface to be up" sleep 5 -#echo "Testing / with client in development mode" -#curl -I http://0.0.0.0:3000/ \ -# 1> log/11-index.log \ -# 2> log/11-index.err -# -#if [ "$(cat log/11-index.log | grep "200 OK" | wc -l)" == "0" ]; then exit 11; fi -# -# -#echo "Testing /phenotypes with client in development mode" -#curl -I http://0.0.0.0:3000/phenotypes \ -# 1> log/12-phenotypes.log \ -# 2> log/12-phenotypes.err -# -# -#echo "Testing opening project in webui with client in development mode" -#curl -I http://0.0.0.0:3000/projects/$PROJECT_ID \ -# 1> log/14-project.log \ -# 2> log/14-project.err -# -#if [ "$(cat log/14-*.log | grep "200 OK" | wc -l)" == "0" ]; then exit 14; fi - - echo "Testing /" curl -I http://0.0.0.0:3001/ \ 1> log/01-index.log \ @@ -49,7 +27,7 @@ echo "Testing project creation" curl --location --request POST 'http://0.0.0.0:8080/api/projects' \ --header 'Accept: text/html' \ --header 'Content-Type: application/json' \ ---data-raw '{"phenotypeID": ["z_FIAT_CINQCENT", "z_FIAT_CINQUECENTO"]}' \ +--data-raw '{"phenotypeID": ["z_MAGIC_FAST", "z_MAGIC_GLUCOSE"]}' \ -o log/03-post-phenotypes.json \ 1> log/03-post-phenotypes.log \ 2> log/03-post-phenotypes.err @@ -60,6 +38,10 @@ if [ ! -d "projects/project_$PROJECT_ID" ]; then fi +echo "Waiting some time project to be created" +sleep 5 + + echo "Testing opening project in webui" curl -I http://0.0.0.0:3001/projects/$PROJECT_ID/ \ 1> log/04-project.log \