diff --git a/jass/models/inittable.py b/jass/models/inittable.py index 7a4d2ced0f5d8db694e0e866dc8a87b828e8c769..6fbdd8c3b194df6977da81beaea4420988f5a809 100644 --- a/jass/models/inittable.py +++ b/jass/models/inittable.py @@ -265,7 +265,7 @@ def create_inittable_file( which_cols.extend(list(pheno_select)) hdf_init.put("PhenoList", pheno_list, format="table", data_columns=True) hdf_init.put("Regions", regions, format="table", data_columns=True) - sum_stat_tab_min_itemsizes = {"snp_ids": 80, "Ref_allele": 70, "Alt_allele": 70} + sum_stat_tab_min_itemsizes = {"snp_ids": 310, "Ref_allele": 300, "Alt_allele": 300} regions_bychr = regions.groupby("chr") diff --git a/jass/models/worktable.py b/jass/models/worktable.py index a67697a0df434f7ccdf098af1db98c9424395dc0..ee48567c4008a030e4ed5abb5232363ddfd43e54 100644 --- a/jass/models/worktable.py +++ b/jass/models/worktable.py @@ -430,20 +430,20 @@ def create_worktable_file( regions = read_hdf(init_file_path, "Regions").index.tolist() sum_stat_tab_min_itemsizes = { - "snp_ids": 80, + "snp_ids": 310, "Region": 10, "CHR": 5, - "Ref_allele": 70, - "Alt_allele": 70, + "Ref_allele": 300, + "Alt_allele": 300, } region_sub_table_min_itemsizes = { "Region": 10, "index": 10, "CHR": 5, - "snp_ids": 80, + "snp_ids": 310, "signif_status": 20, - "Ref_allele": 70, - "Alt_allele": 70, + "Ref_allele": 300, + "Alt_allele": 300, } smart_na_computation = not (remove_nan)