Commit c56e7f0b authored by Hanna  JULIENNE's avatar Hanna JULIENNE
Browse files

test to fix gencov

parent 48243ca3
......@@ -865,6 +865,13 @@ def get_worktable_gencov(project_hdf_path: str):
for i in range(gencov.shape[0]):
for j in range(i, gencov.shape[0]):
if np.isnan(gencov.loc[sorted_trait.index[i], sorted_trait.index[j]]):
lines.append({
"phenotypeID_A": sorted_trait.iloc[i],
"phenotypeID_B": sorted_trait.iloc[j],
"gencov":"null"
})
else:
lines.append({
"phenotypeID_A": sorted_trait.iloc[i],
"phenotypeID_B": sorted_trait.iloc[j],
......
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