Index

C

compute_is_aligned() (in module jass_preprocessing.map_reference) compute_is_flipped() (in module jass_preprocessing.map_reference) compute_sample_size() (in module jass_preprocessing.compute_score)

compute_snp_alignement() (in module jass_preprocessing.map_reference) compute_z_score() (in module jass_preprocessing.compute_score) convert_missing_values() (in module jass_preprocessing.map_gwas)

D

dna_complement() (in module jass_preprocessing.dna_utils)

dna_complement_base() (in module jass_preprocessing.dna_utils)

G

gwas_internal_link() (in module jass_preprocessing.map_gwas)

J

jass_preprocessing (module) jass_preprocessing.compute_score (module) jass_preprocessing.dna_utils (module)

jass_preprocessing.map_gwas (module) jass_preprocessing.map_reference (module) jass_preprocessing.save_output (module)

M

map_columns_position() (in module jass_preprocessing.map_gwas)

map_on_ref_panel() (in module jass_preprocessing.map_reference)

R

read_gwas() (in module jass_preprocessing.map_gwas)

read_reference() (in module jass_preprocessing.map_reference)

S

save_output() (in module jass_preprocessing.save_output)

save_output_by_chromosome() (in module jass_preprocessing.save_output)

W

walkfs() (in module jass_preprocessing.map_gwas)