From 11ee29ad1e20eb5b5e9a0774c457eb74160736f5 Mon Sep 17 00:00:00 2001
From: hjulienn <hanna.julienne@pasteur.fr>
Date: Fri, 1 Oct 2021 16:09:24 +0200
Subject: [PATCH] typo
---
jass_preprocessing/map_reference.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/jass_preprocessing/map_reference.py b/jass_preprocessing/map_reference.py
index 8210e0a..1949b1b 100644
--- a/jass_preprocessing/map_reference.py
+++ b/jass_preprocessing/map_reference.py
@@ -82,7 +82,7 @@ def map_on_ref_panel(gw_df , ref_panel, index_type="rs-number"):
else:
raise ValueError("index_type can take only two values: 'rs-number' or 'positional'")
- if (("pos" in merge_GWAS.columns) and ("POS" in merge_GWAS.columns))
+ if (("pos" in merge_GWAS.columns) and ("POS" in merge_GWAS.columns)):
if (merge_GWAS.pos == merge_GWAS.POS).mean()> 0.95):
merge_GWAS = merge_GWAS.loc[(merge_GWAS.pos == merge_GWAS.POS)]
else:
--
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