diff --git a/jass_preprocessing/__main__.py b/jass_preprocessing/__main__.py
index a4a9a56d832ba513bdcfe5741452fe73cc782614..9c62d8ce4796044b802bc9219b3d2e55bae9457b 100644
--- a/jass_preprocessing/__main__.py
+++ b/jass_preprocessing/__main__.py
@@ -34,7 +34,6 @@ def launch_preprocessing(args):
 
     print('processing GWAS: {}'.format(tag))
     start = time.time()
-    gwas = jp.map_gwas.gwas_internal_link(GWAS_table, args.gwas_folder)
     GWAS_link = jp.map_gwas.walkfs(args.gwas_folder, args.gwas_filename)[2]
     mapgw = jp.map_gwas.map_columns_position(GWAS_link, args.gwas_info)
     print(mapgw)