From 2533e55286637e0d86adda1f688547663d4afdff Mon Sep 17 00:00:00 2001
From: hanna julienne <hanna.julienne@pasteur.fr>
Date: Thu, 29 Nov 2018 15:37:33 +0100
Subject: [PATCH] fixed main

---
 jass_preprocessing/__main__.py | 1 -
 1 file changed, 1 deletion(-)

diff --git a/jass_preprocessing/__main__.py b/jass_preprocessing/__main__.py
index a4a9a56..9c62d8c 100644
--- a/jass_preprocessing/__main__.py
+++ b/jass_preprocessing/__main__.py
@@ -34,7 +34,6 @@ def launch_preprocessing(args):
 
     print('processing GWAS: {}'.format(tag))
     start = time.time()
-    gwas = jp.map_gwas.gwas_internal_link(GWAS_table, args.gwas_folder)
     GWAS_link = jp.map_gwas.walkfs(args.gwas_folder, args.gwas_filename)[2]
     mapgw = jp.map_gwas.map_columns_position(GWAS_link, args.gwas_info)
     print(mapgw)
-- 
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