From 334f61a09bc959e7d8f9b9298b633f77d93d859a Mon Sep 17 00:00:00 2001
From: Hanna JULIENNE <hanna.julienne@pasteur.fr>
Date: Mon, 19 Jul 2021 09:25:41 +0000
Subject: [PATCH] Update save_output.py
---
jass_preprocessing/save_output.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/jass_preprocessing/save_output.py b/jass_preprocessing/save_output.py
index 92952d0..c66dc90 100644
--- a/jass_preprocessing/save_output.py
+++ b/jass_preprocessing/save_output.py
@@ -12,7 +12,7 @@ def save_output_by_chromosome(mgwas, ImpG_output_Folder, my_study):
mgwas_copy.dropna(subset=["computed_z"], how="any", inplace=True)
print(mgwas_copy.index.unique())
for chrom in mgwas_copy.index.unique():
-
+ print(mgwas_copy.loc[chrom])
mgwas_chr = pd.DataFrame({
'rsID': mgwas_copy.loc[chrom].snp_id,
'pos': mgwas_copy.loc[chrom].pos,
--
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