diff --git a/jass_preprocessing/__main__.py b/jass_preprocessing/__main__.py index 75e38801adc1c253a48c6c8baf7e634e60245511..b089d3cbd56aaf02b8e4d7cca8c3d01e0e9e3256 100644 --- a/jass_preprocessing/__main__.py +++ b/jass_preprocessing/__main__.py @@ -2,7 +2,7 @@ Read raw GWAS summary statistics, filter and format Write clean GWAS datasets by chromosome """ -__updated__ = '2018-26-06' +__updated__ = '2022-03-02' import pandas as pd import jass_preprocessing as jp @@ -95,7 +95,6 @@ def add_preprocessing_argument(): parser.add_argument('--additional-masked-region', required=False, help= "List of dictionary containing coordinate of region to mask. For example :[{'chr':6, 'start':50000000, 'end': 70000000}, {'chr':6, 'start':100000000, 'end': 120000000}]", default='None') parser.add_argument('--imputation-quality-treshold', required=False, help= "minimum imputation quality in summary statistics", default='None') - parser.add_argument('--index-type', required=False, help= "type of index : rsID or chr:postion:ref_allele:alt_allele", default='rs-number') parser.set_defaults(func=launch_preprocessing)