diff --git a/jass_preprocessing/__main__.py b/jass_preprocessing/__main__.py index 2081c6810096fc43d93e5f79b255105650a843c5..ad6d58d46116db8e02b040d91d65d788a8347c24 100644 --- a/jass_preprocessing/__main__.py +++ b/jass_preprocessing/__main__.py @@ -61,7 +61,7 @@ def launch_preprocessing(args): mgwas = jp.map_reference.map_on_ref_panel(gw_df, ref, gwas_map.loc[tag, "index_type"]) mgwas = jp.map_reference.compute_snp_alignement(mgwas) mgwas = jp.compute_score.compute_z_score(mgwas) - mgwas = jp.compute_score.compute_sample_size(mgwas, args.diagnostic_folder, tag, args.percent_sample_size) + mgwas = jp.compute_score.compute_sample_size(mgwas, args.diagnostic_folder, tag, float(args.percent_sample_size)) end = time.time() print("Preprocessing of {0} in {1}s".format(tag, end-start))