diff --git a/jass_preprocessing/save_output.py b/jass_preprocessing/save_output.py index de6817896a5f939ce586d4a50d881b8547841fd6..6e3498ce648c928afac4747cf739ddb704cff08b 100644 --- a/jass_preprocessing/save_output.py +++ b/jass_preprocessing/save_output.py @@ -43,8 +43,9 @@ def save_output(mgwas, ImpG_output_Folder, my_study): 'A0': mgwas_copy.ref, 'A1':mgwas_copy.alt, 'Z': mgwas_copy.computed_z, - 'P': mgwas_copy.pval - }, columns= ['chrom','rsID', 'pos', 'A0', "A1", "Z", "P" ]) + 'P': mgwas_copy.pval, + "N": mgwas_copy.computed_N + }, columns= ['chrom','rsID', 'pos', 'A0', "A1", "Z", "P", "N"]) impg_output_file = ImpG_output_Folder + 'z_'+ my_study +".txt" print("WRITING results for {} to: {}".format( my_study, ImpG_output_Folder))