From 5f83f55f2f845d63103e70d199e3d12c0dbdcdca Mon Sep 17 00:00:00 2001
From: Hanna JULIENNE <hanna.julienne@pasteur.fr>
Date: Mon, 17 Jul 2023 16:36:52 +0200
Subject: [PATCH] Update file save_output.py
---
jass_preprocessing/save_output.py | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/jass_preprocessing/save_output.py b/jass_preprocessing/save_output.py
index de68178..6e3498c 100644
--- a/jass_preprocessing/save_output.py
+++ b/jass_preprocessing/save_output.py
@@ -43,8 +43,9 @@ def save_output(mgwas, ImpG_output_Folder, my_study):
'A0': mgwas_copy.ref,
'A1':mgwas_copy.alt,
'Z': mgwas_copy.computed_z,
- 'P': mgwas_copy.pval
- }, columns= ['chrom','rsID', 'pos', 'A0', "A1", "Z", "P" ])
+ 'P': mgwas_copy.pval,
+ "N": mgwas_copy.computed_N
+ }, columns= ['chrom','rsID', 'pos', 'A0', "A1", "Z", "P", "N"])
impg_output_file = ImpG_output_Folder + 'z_'+ my_study +".txt"
print("WRITING results for {} to: {}".format( my_study, ImpG_output_Folder))
--
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