From 8d8bb392804439f603480895df9ecadd25c07fae Mon Sep 17 00:00:00 2001
From: Hanna  JULIENNE <hanna.julienne@pasteur.fr>
Date: Thu, 9 Feb 2023 10:59:30 +0100
Subject: [PATCH] Remove old irrelevant comment

---
 jass_preprocessing/__main__.py | 11 -----------
 1 file changed, 11 deletions(-)

diff --git a/jass_preprocessing/__main__.py b/jass_preprocessing/__main__.py
index d9ceda6..89d6256 100644
--- a/jass_preprocessing/__main__.py
+++ b/jass_preprocessing/__main__.py
@@ -11,17 +11,6 @@ import time
 import argparse
 
 
-#| variable name | description | current default value|
-#|---------------|-------------|----------------------|
-#| netPath | Main project folder, must end by "/" | /mnt/atlas/ |
-#| args.gwas_info* | Path to the file describing the format of the individual GWASs files | netPath+'PCMA/1._DATA/RAW.GWAS/args.gwas_info.csv' |
-#| GWAS_path* | Path to the folder containing the GWASs summ stat files, must end by "/" | netPath+'PCMA/1._DATA/RAW.GWAS/'|
-#| diagnostic_folder | folder for histograms of sample size distribution among SNPs | /mnt/atlas/PCMA/1._DATA/sample_size_distribution/ |
-#| ldscore_format | data formated to use LDscore, 1 file per study | /mnt/atlas/PCMA/1._DATA/ldscore_data/ |
-#| REF_filename* | file containing the reference panel for imputation | netPath+'PCMA/0._REF/1KGENOME/summary_genome_Filter_part2.out' |
-#| pathOUT | **unused in main_preprocessing.py**  | netPath+'PCMA/1._DATA/RAW.summary/'|
-#| ImpG_output_Folder | main ouput folder | netPath+ 'PCMA/1._DATA/preprocessing_test/' |
-
 def raise_duplicated_index(tag):
     duplicated_index = tag.duplicated()
     raise ValueError("'Consortium_Outcome' are duplicated for: {0}".format(duplicated_index))
-- 
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