From 9df7ebfb6ae174a9bb412bb8143fa75dd1771384 Mon Sep 17 00:00:00 2001 From: Hanna JULIENNE <hanna.julienne@pasteur.fr> Date: Tue, 20 Nov 2018 21:33:41 +0100 Subject: [PATCH] Update README.md --- README.md | 28 +--------------------------- 1 file changed, 1 insertion(+), 27 deletions(-) diff --git a/README.md b/README.md index a062d1a..ede72e5 100644 --- a/README.md +++ b/README.md @@ -1,33 +1,7 @@ - # Preprocessing package for cleaning and formating data for JASS This helper package convert heterogeneous GWAS summary statistic format to the IMPG input format. -## Installation - -*Requirement* : - -## Usage - -Once installed the preprocessing can be launch in the following manner: - - - -## reference panel format: - -The user is expected to provide a reference panel with the following -column naming and column types: - -| chr | pos | snp_id | ref | alt | MAF | -|-----|-----|--------|-----|-----|-----| -|1 |13116 |rs62635286 | T| G| 0.0970447| -|1 |13118 |rs200579949 |A |G |0.0970447| -|1 |14604 |rs541940975 |A |G |0.147564| -|1 |14930 |rs75454623 |A |G |0.482228| - -*** - -## Output format -['rsID', 'pos', 'A0', "A1", "Z" ] +The package is documented at http://statistical-genetics.pages.pasteur.fr/JASS_Pre-processing/ \ No newline at end of file -- GitLab