From c5ca18bf5112ee9acf6e1fe8766f6d41964a1deb Mon Sep 17 00:00:00 2001
From: hjulienn <hanna.julienne@pasteur.fr>
Date: Fri, 1 Oct 2021 16:15:49 +0200
Subject: [PATCH] typo
---
jass_preprocessing/map_reference.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/jass_preprocessing/map_reference.py b/jass_preprocessing/map_reference.py
index 1949b1b..2b676aa 100644
--- a/jass_preprocessing/map_reference.py
+++ b/jass_preprocessing/map_reference.py
@@ -83,7 +83,7 @@ def map_on_ref_panel(gw_df , ref_panel, index_type="rs-number"):
raise ValueError("index_type can take only two values: 'rs-number' or 'positional'")
if (("pos" in merge_GWAS.columns) and ("POS" in merge_GWAS.columns)):
- if (merge_GWAS.pos == merge_GWAS.POS).mean()> 0.95):
+ if ((merge_GWAS.pos == merge_GWAS.POS).mean()> 0.95):
merge_GWAS = merge_GWAS.loc[(merge_GWAS.pos == merge_GWAS.POS)]
else:
raise ValueError("SNP positions in reference panel and in Summary statistic are different! Different assembly?")
--
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