From d644c80011f742986a4a498451d821be16fce481 Mon Sep 17 00:00:00 2001
From: hanna julienne <hanna.julienne@pasteur.fr>
Date: Fri, 30 Nov 2018 10:25:58 +0100
Subject: [PATCH] fixed cast
---
jass_preprocessing/compute_score.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/jass_preprocessing/compute_score.py b/jass_preprocessing/compute_score.py
index c275ceb..fd176a3 100644
--- a/jass_preprocessing/compute_score.py
+++ b/jass_preprocessing/compute_score.py
@@ -51,7 +51,7 @@ def compute_sample_size(mgwas, diagnostic_folder, trait, perSS = 0.7):
warnings.warn("Some snp had an infinite sample size")
myW_thres = np.percentile(myN.dropna(), 90)
- ss_thres = int(perSS) * myW_thres
+ ss_thres = float(perSS) * myW_thres
mgwas["computed_N"] = myN
plt.clf()
p1 = sns.distplot(mgwas.computed_N[~mgwas.computed_N.isna()])
--
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