From 54c84beeb4ff3d8ff1d6cab5f7b2546d4bc80479 Mon Sep 17 00:00:00 2001 From: hjulienn <hjulienn> Date: Thu, 19 Jan 2023 14:35:36 +0100 Subject: [PATCH] specify version of nextflow to avoid issue when DSL1 is sunsetted --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index feacf04..1b29965 100644 --- a/README.md +++ b/README.md @@ -52,7 +52,7 @@ They correspond to the chromosome 21 and 22 for the East asian ancestry. Once done you can launch the pipeline as: ``` - nextflow run jass_pipeline.nf --ref_panel_WG {ABSOLUTE_PATH_TO_PIPELINE_FOLDER}Ref_Panel/1000G_EAS_0_01_chr22_21.csv --gwas_folder {ABSOLUTE_PATH_TO_PIPELINE_FOLDER}/test_data/hg38_EAS/ --meta-data {ABSOLUTE_PATH_TO_PIPELINE_FOLDER}/input_files/Data_test_EAS.csv --region {ABSOLUTE_PATH_TO_PIPELINE_FOLDER}/input_files/All_Regions_ALL_ensemble_1000G_hg38_EAS.bed --group {ABSOLUTE_PATH_TO_PIPELINE_FOLDER}/input_files/group.txt -with-report jass_report.html -c nextflow_local.config + NXF_VER=22.10.5 nextflow run jass_pipeline.nf --ref_panel_WG {ABSOLUTE_PATH_TO_PIPELINE_FOLDER}Ref_Panel/1000G_EAS_0_01_chr22_21.csv --gwas_folder {ABSOLUTE_PATH_TO_PIPELINE_FOLDER}/test_data/hg38_EAS/ --meta-data {ABSOLUTE_PATH_TO_PIPELINE_FOLDER}/input_files/Data_test_EAS.csv --region {ABSOLUTE_PATH_TO_PIPELINE_FOLDER}/input_files/All_Regions_ALL_ensemble_1000G_hg38_EAS.bed --group {ABSOLUTE_PATH_TO_PIPELINE_FOLDER}/input_files/group.txt -with-report jass_report.html -c nextflow_local.config ``` See the description of required parameters in the next section. You can specify parameter in the jass_pipeline.nf header if prefered. -- GitLab