From a0a948d46562c34226dc51e859363e64a6fbd9ea Mon Sep 17 00:00:00 2001 From: hjulienn <hanna.julienne@pasteur.fr> Date: Wed, 11 Oct 2023 10:27:16 +0200 Subject: [PATCH] added meta data for tutorial --- input_files/Data_test_EAS.csv | 4 ++++ 1 file changed, 4 insertions(+) create mode 100644 input_files/Data_test_EAS.csv diff --git a/input_files/Data_test_EAS.csv b/input_files/Data_test_EAS.csv new file mode 100644 index 0000000..39596cb --- /dev/null +++ b/input_files/Data_test_EAS.csv @@ -0,0 +1,4 @@ +"filename" "Consortium" "Outcome" "FullName" "internalDataLink" "Type" "Reference" "ReferenceLink" "dataLink" "Nsample" "Ncase" "Ncontrol" "Nsnp" "snpid" "POS" "CHR" "a1" "a2" "freq" "pval" "n" "z" "OR" "se" "index_type" "imp" "ncas" "ncont" +"WBC_EAS_chr22.tsv" "BCT" "WBC" "White blood cell count" "Cellular" "Chen MH et al. 2020" "https://pubmed.ncbi.nlm.nih.gov/32888493/" "http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90002001-GCST90003000/GCST90002373/harmonised/32888493-GCST90002373-EFO_0007988.h.tsv.gz" 15061 36864690 "hm_rsid" "hm_pos" "hm_chrom" "hm_effect_allele" "hm_other_allele" "hm_effect_allele_frequency" "p_value" "hm_beta" "standard_error" "rs-number" +"RBC_EAS_chr22.tsv" "BCT" "RBC" "Red blood cell count" "Cellular" "Chen MH et al. 2020" "https://pubmed.ncbi.nlm.nih.gov/32888493/" "http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90002001-GCST90003000/GCST90002373/harmonised/32888493-GCST90002373-EFO_0007988.h.tsv.gz" 15061 36864690 "hm_rsid" "hm_pos" "hm_chrom" "hm_effect_allele" "hm_other_allele" "hm_effect_allele_frequency" "p_value" "hm_beta" "standard_error" "rs-number" +"PLT_EAS_chr22.tsv" "BCT" "PLT" "Platelet cell count" "Cellular" "Chen MH et al. 2020" "https://pubmed.ncbi.nlm.nih.gov/32888493/" "http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90002001-GCST90003000/GCST90002373/harmonised/32888493-GCST90002373-EFO_0007988.h.tsv.gz" 15061 36864690 "hm_rsid" "hm_pos" "hm_chrom" "hm_effect_allele" "hm_other_allele" "hm_effect_allele_frequency" "p_value" "hm_beta" "standard_error" "rs-number" -- GitLab