From c08fac16e33c1d3b062d544db0fce232e1a1db3e Mon Sep 17 00:00:00 2001
From: Hanna  JULIENNE <hanna.julienne@pasteur.fr>
Date: Wed, 1 Feb 2023 15:37:31 +0100
Subject: [PATCH] added the flag to compute imputation to the doc

---
 README.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/README.md b/README.md
index 1b29965..f8ffce5 100644
--- a/README.md
+++ b/README.md
@@ -96,6 +96,7 @@ See JASS documentation for its usage (https://statistical-genetics.pages.pasteur
 
 For this step you will need to install an additional dependency [RAISS](https://gitlab.pasteur.fr/statistical-genetics/raiss) python package.
 
+* --compute_imputation=true : the imputation   step will be performed
 * --ref_panel : A folder containing a Reference Panel in the .bim, .bed, .fam format for imputation with RAISS
 * --ld-folder : A path toward a folder containing LD matrices (that can be generated from the reference panel with the raiss package as described here : http://statistical-genetics.pages.pasteur.fr/raiss/#precomputation-of-ld-correlation)
 
-- 
GitLab