diff --git a/README.md b/README.md index c73b0201e81e417936be09a1cfc9ddfd66cc8739..98acf7b980bd18bc19221b2db2dd9bb084f6851d 100644 --- a/README.md +++ b/README.md @@ -1,12 +1,22 @@ # Gitlab repository for the MANOCCA project -Tool used to compute the covariance test on a set of predictors, presented in this paper : hhttps://academic.oup.com/bib/article/25/4/bbae272/7690346 MANOCCA (Multivariate ANalysis of Conditional CovAriance) performs the covariance test : $Cov(Y_1,Y_2) ~ X + C$, as well as the multivariate version with more than two Y outcomes. In quick words, MANOCCA (Multivariate ANalysis of Conditional CovAriance) is a test of differences of covariance with regard to a predictor. The test is orthogonal to mean and variance effects, and will only grasp covariance effects. +Tool used to compute the covariance test on a set of predictors, presented in this paper : https://academic.oup.com/bib/article/25/4/bbae272/7690346 MANOCCA (Multivariate ANalysis of Conditional CovAriance) performs the covariance test : $Cov(Y_1,Y_2) \~ X + C$, as well as the multivariate version with more than two Y outcomes. In quick words, MANOCCA (Multivariate ANalysis of Conditional CovAriance) is a test of differences in correlations/covariance with regard to a predictor. The test is orthogonal to mean and variance effects, and will only grasp covariance effects. + +One application of the MANOCCA test to detect co-abunding human gut microbiome communities can be found in this preprint : https://www.medrxiv.org/content/10.1101/2024.04.30.24306630v1.full + +Note : If all outcomes are centered and scaled, then $Corr(Y_1, Y_2) = Cov(Y_1,Y_2)$ and MANOCCA can test for changes in correlation. The subtleties of covariance vs correlation are discussed in the main draft and supplements of the paper above. Author : Christophe BOETTO +Archived commit pinned for the article https://academic.oup.com/bib/article/25/4/bbae272/7690346 in case the tool evolves in the future : 6d76df07 +To go to this specific commit do : +- git clone <manocca_https_link> +- cd manocca +- git reset --hard 6d76df07 + # Contents -The current repository contains the Python and R versions of MANOCCA. The python is more detailed than the R version, but I will work on it. +The current repository contains the Python and R versions of MANOCCA. The python is more detailed than the R version, but they both provide the same test. In the Python version you will find : - MANOCCA - the multivariate test on covariance - MANOVA - the multivariate test on mean