From 4da89ee2c183b49e7ff693f2b6651894458d341c Mon Sep 17 00:00:00 2001
From: Yuka Suzuki <yuka.suzuki@pasteur.fr>
Date: Mon, 15 Jan 2024 10:43:32 +0100
Subject: [PATCH] note: plink-based column generated by get_GWAShitcount.py
verified and added back again.
---
README.md | 1 +
1 file changed, 1 insertion(+)
diff --git a/README.md b/README.md
index 38c1c64..6d2df2a 100644
--- a/README.md
+++ b/README.md
@@ -47,6 +47,7 @@ Scripts and data used in the analysis and visualisation in the manuscript ``Trai
| [Column names] 'trait_name': name of the trait
| 'univ_hit_count': the number of non-independent variants significant by univariate gwas.
| 'univ_hit_region_count': the number of independent region (loci) with variants significant by univariate gwas.
+ | 'univ_hit_plinkclumps_count': the number of independent region estimated by plink that contain variants significant by univariate gwas.
|---- /JASS_5CVdata-2023-08-01 <- inputs and outputs in the regression analysis for estimating contributions of trait features to multi-trait gain (as in ~/Regression_Analysis/ below)
| |---- 5foldCV_linear_summary_semilogadjust_log10_excCorVar.csv : summary of 5-fold cross validation with a linear model (main).
| |---- 5foldCV_linear_summary_semilogadjust_log10_excCorVar_wMES.csv : summary of 5-fold cross validation with a lienar model when replacing %h2u with MES.
--
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