From c8577f4337c787845e44f28de1430354de1eb9c9 Mon Sep 17 00:00:00 2001 From: Yuka Suzuki <yuka.suzuki@pasteur.fr> Date: Mon, 15 Jan 2024 17:37:02 +0100 Subject: [PATCH] updated --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 6d2df2a..1c3371f 100644 --- a/README.md +++ b/README.md @@ -26,8 +26,8 @@ Scripts and data used in the analysis and visualisation in the manuscript ``Trai | [Column names] 'Region': Independent region (loci), | 'n_associated_JASS': out of 1776 traitsets containing GIANT_BMI, how many times the region was associated by JASS while not associated by GIANT_BMI. | 'n_associated_JASS_corrected': same as 'n_associated_JASS' except that the significance by JASS is evaluated by q-value (p-value x 1776). - | 'P_small_gwas': P-value in the smaller univariate GWAS (GIANT_BMI). - | 'min_P_jass_joint': minimum P-value of the region by JASS across 1776 traitsets with GIANT_BMI + | 'P_small_gwas': P-value in the smaller univariate GWAS (GIANT_BMI). (It's the minimum across SNPs in the same region.) + | 'min_P_jass_joint': minimum P-value of the region by JASS across 1776 traitsets with GIANT_BMI. -1 if the region is associated by the small univ BMI GWAS. | 'P_univ_large_gwas': P-value in the larger univariate GWAS. | 'evaluate': comparison between JASS and large GWAS results. | 'JASS': whether JASS detected the region as significant. -- GitLab