diff --git a/raiss/pipes.py b/raiss/pipes.py index 6c14df58d273d2b7e10b1d56fbf844bae3b63bd6..08ad57c2d00ee46cbe2b286660ff81acc7917598 100644 --- a/raiss/pipes.py +++ b/raiss/pipes.py @@ -41,7 +41,6 @@ def save_chromosome_imputation(gwas, chrom, window_size, buffer_size, # Formatting and filtering # and Saving results - minimum_ld = 20 z_fo = "{0}/z_{1}_{2}{3}.txt".format(output_folder, gwas, chrom, tag) filter_output(imputed_zscore, z_fo, float(R2_threshold), minimum_ld=float(minimum_ld)) print("Save imputation done at {0}".format(z_fo))