From 61238e9350ce7bff8b603247edf164dd936a3612 Mon Sep 17 00:00:00 2001
From: Hanna JULIENNE <hanna.julienne@pasteur.fr>
Date: Mon, 12 Apr 2021 16:51:01 +0000
Subject: [PATCH] Update pipes.py
---
raiss/pipes.py | 1 -
1 file changed, 1 deletion(-)
diff --git a/raiss/pipes.py b/raiss/pipes.py
index 6c14df5..08ad57c 100644
--- a/raiss/pipes.py
+++ b/raiss/pipes.py
@@ -41,7 +41,6 @@ def save_chromosome_imputation(gwas, chrom, window_size, buffer_size,
# Formatting and filtering
# and Saving results
- minimum_ld = 20
z_fo = "{0}/z_{1}_{2}{3}.txt".format(output_folder, gwas, chrom, tag)
filter_output(imputed_zscore, z_fo, float(R2_threshold), minimum_ld=float(minimum_ld))
print("Save imputation done at {0}".format(z_fo))
--
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