Commit 6278458a authored by Hanna  JULIENNE's avatar Hanna JULIENNE

Correct definition of l2_regularization command line argument

parent 62d35d39
Pipeline #9959 passed with stages
in 1 minute and 5 seconds
......@@ -29,7 +29,7 @@ def add_chromosome_imputation_argument():
parser.add_argument('--window-size', help= "Size of the non overlapping window", default = 500000)
parser.add_argument('--buffer-size', help= "Size of the buffer around the imputation window", default = 125000)
parser.add_argument('--l2-regularization', help= "Size of the buffer around the imputation window", default = 0.1)
parser.add_argument('--l2-regularization', help= "Size of the small value added to the diagonal of the covariance matrix before inversion", default = 0.1)
parser.add_argument('--eigen-threshold', help= "threshold under which eigen vectors are removed for the computation of the pseudo inverse", default = 0.1)
parser.add_argument('--R2-threshold', help= "R square (imputation quality) threshold bellow which SNPs are filtered from the output", default = 0.6)
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